STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADR20224.1Permease YjgP/YjgQ family protein; COGs: COG0795 permease; InterPro IPR005495; KEGG: chu:CHU_1788 permease; PFAM: permease YjgP/YjgQ family protein; SPTR: Putative permease, YjgP/YjgQ family; PFAM: Predicted permease YjgP/YjgQ family. (549 aa)    
Predicted Functional Partners:
ADR21431.1
ABC transporter related protein; COGs: COG1137 ABC-type (unclassified) transport system ATPase component; InterPro IPR003439: IPR003593; KEGG: aas:Aasi_1421 hypothetical protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: ABC transporter, ATP-binding protein; PFAM: ABC transporter.
 
 
 0.971
fmt
methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family.
 
    0.904
ADR20322.1
Permease YjgP/YjgQ family protein; COGs: COG0795 permease; InterPro IPR005495; KEGG: sli:Slin_2956 permease YjgP/YjgQ family protein; PFAM: permease YjgP/YjgQ family protein; SPTR: Permease YjgP/YjgQ family protein; PFAM: Predicted permease YjgP/YjgQ family.
 
 
 
0.868
ADR21993.1
Protein of unknown function DUF1239; InterPro IPR010664; KEGG: chu:CHU_3270 hypothetical protein; PFAM: protein of unknown function DUF1239; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1239).
 
 
 0.803
ADR21762.1
COGs: COG4775 Outer membrane protein/protective antigen OMA87; InterPro IPR010827: IPR000184: IPR016474; KEGG: sli:Slin_4434 outer membrane protein assembly complex, YaeT protein; PFAM: surface antigen (D15); surface antigen variable number repeat-containing protein; SPTR: Putative outer membrane protein; TIGRFAM: outer membrane protein assembly complex, YaeT protein; PFAM: Surface antigen variable number repeat; Surface antigen; TIGRFAM: outer membrane protein assembly complex, YaeT protein.
 
     0.745
ADR22354.1
KEGG: dfe:Dfer_3804 hypothetical protein; SPTR: Putative uncharacterized protein.
 
     0.733
fabZ
3-hydroxyacyl-(acyl-carrier-protein) dehydratase; Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis; Belongs to the thioester dehydratase family. FabZ subfamily.
 
  
 0.713
ADR22111.1
KEGG: chu:CHU_0307 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF2723).
  
     0.683
ADR23548.1
Protein of unknown function DUF164; COGs: COG1579 Zn-ribbon protein possibly nucleic acid-binding; InterPro IPR003743; KEGG: chu:CHU_1806 hypothetical protein; PFAM: protein of unknown function DUF164; SPTR: Putative uncharacterized protein; PFAM: Putative zinc ribbon domain.
  
     0.666
ADR20336.1
COGs: COG0811 Biopolymer transport protein; InterPro IPR002898; KEGG: zpr:ZPR_3934 MotA/TolQ/ExbB family biopolymer transport protein; PFAM: MotA/TolQ/ExbB proton channel; SPTR: Putative biopolymer transport protein; PFAM: MotA/TolQ/ExbB proton channel family; TC 2.C.1.1.1.
 
     0.663
Your Current Organism:
Marivirga tractuosa
NCBI taxonomy Id: 643867
Other names: Flexibacter tractuosus DSM 4126, Flexibacter tractuosus IFO 15989, M. tractuosa DSM 4126, Marivirga tractuosa DSM 4126, Marivirga tractuosa IFO 15989, Marivirga tractuosa str. DSM 4126, Marivirga tractuosa strain DSM 4126
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