Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| ADR20227.1 | ADR21415.1 | Ftrac_0216 | Ftrac_1425 | RNA polymerase, sigma 70 subunit, RpoD subfamily; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.692 |
| ADR20227.1 | ADR21748.1 | Ftrac_0216 | Ftrac_1760 | RNA polymerase, sigma 70 subunit, RpoD subfamily; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | DNA-cytosine methyltransferase; COGs: COG0270 Site-specific DNA methylase; InterPro IPR001525: IPR000551: IPR018117; KEGG: wch:wcw_1690 C-5 cytosine-specific DNA methylase; PFAM: C-5 cytosine-specific DNA methylase; regulatory protein MerR; PRIAM: DNA (cytosine-5-)-methyltransferase; SPTR: Cytosine-specific methyltransferase; TIGRFAM: DNA-cytosine methyltransferase; PFAM: MerR family regulatory protein; C-5 cytosine-specific DNA methylase; TIGRFAM: DNA-methyltransferase (dcm); DNA binding domain, excisionase family. | 0.679 |
| ADR20227.1 | dnaG | Ftrac_0216 | Ftrac_0931 | RNA polymerase, sigma 70 subunit, RpoD subfamily; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | 0.904 |
| ADR20227.1 | lepA | Ftrac_0216 | Ftrac_2875 | RNA polymerase, sigma 70 subunit, RpoD subfamily; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | GTP-binding protein LepA; Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back-translocation proceeds from a post-translocation (POST) complex to a pre- translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP- dependent manner. | 0.736 |
| ADR20227.1 | nusA | Ftrac_0216 | Ftrac_2448 | RNA polymerase, sigma 70 subunit, RpoD subfamily; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | NusA antitermination factor; Participates in both transcription termination and antitermination. | 0.807 |
| ADR20227.1 | pnp | Ftrac_0216 | Ftrac_0215 | RNA polymerase, sigma 70 subunit, RpoD subfamily; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | 0.843 |
| ADR20227.1 | rpoA | Ftrac_0216 | Ftrac_3058 | RNA polymerase, sigma 70 subunit, RpoD subfamily; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.924 |
| ADR20227.1 | rpoB | Ftrac_0216 | Ftrac_3025 | RNA polymerase, sigma 70 subunit, RpoD subfamily; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.926 |
| ADR20227.1 | rpoC | Ftrac_0216 | Ftrac_3026 | RNA polymerase, sigma 70 subunit, RpoD subfamily; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.918 |
| ADR20227.1 | rpoZ | Ftrac_0216 | Ftrac_0971 | RNA polymerase, sigma 70 subunit, RpoD subfamily; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.852 |
| ADR21415.1 | ADR20227.1 | Ftrac_1425 | Ftrac_0216 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | RNA polymerase, sigma 70 subunit, RpoD subfamily; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.692 |
| ADR21415.1 | dnaG | Ftrac_1425 | Ftrac_0931 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | 0.534 |
| ADR21415.1 | nusA | Ftrac_1425 | Ftrac_2448 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | NusA antitermination factor; Participates in both transcription termination and antitermination. | 0.717 |
| ADR21415.1 | rpoA | Ftrac_1425 | Ftrac_3058 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.490 |
| ADR21415.1 | rpoB | Ftrac_1425 | Ftrac_3025 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.434 |
| ADR21415.1 | rpoC | Ftrac_1425 | Ftrac_3026 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.420 |
| ADR21748.1 | ADR20227.1 | Ftrac_1760 | Ftrac_0216 | DNA-cytosine methyltransferase; COGs: COG0270 Site-specific DNA methylase; InterPro IPR001525: IPR000551: IPR018117; KEGG: wch:wcw_1690 C-5 cytosine-specific DNA methylase; PFAM: C-5 cytosine-specific DNA methylase; regulatory protein MerR; PRIAM: DNA (cytosine-5-)-methyltransferase; SPTR: Cytosine-specific methyltransferase; TIGRFAM: DNA-cytosine methyltransferase; PFAM: MerR family regulatory protein; C-5 cytosine-specific DNA methylase; TIGRFAM: DNA-methyltransferase (dcm); DNA binding domain, excisionase family. | RNA polymerase, sigma 70 subunit, RpoD subfamily; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.679 |
| ADR21748.1 | rpoA | Ftrac_1760 | Ftrac_3058 | DNA-cytosine methyltransferase; COGs: COG0270 Site-specific DNA methylase; InterPro IPR001525: IPR000551: IPR018117; KEGG: wch:wcw_1690 C-5 cytosine-specific DNA methylase; PFAM: C-5 cytosine-specific DNA methylase; regulatory protein MerR; PRIAM: DNA (cytosine-5-)-methyltransferase; SPTR: Cytosine-specific methyltransferase; TIGRFAM: DNA-cytosine methyltransferase; PFAM: MerR family regulatory protein; C-5 cytosine-specific DNA methylase; TIGRFAM: DNA-methyltransferase (dcm); DNA binding domain, excisionase family. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.588 |
| ADR21748.1 | rpoB | Ftrac_1760 | Ftrac_3025 | DNA-cytosine methyltransferase; COGs: COG0270 Site-specific DNA methylase; InterPro IPR001525: IPR000551: IPR018117; KEGG: wch:wcw_1690 C-5 cytosine-specific DNA methylase; PFAM: C-5 cytosine-specific DNA methylase; regulatory protein MerR; PRIAM: DNA (cytosine-5-)-methyltransferase; SPTR: Cytosine-specific methyltransferase; TIGRFAM: DNA-cytosine methyltransferase; PFAM: MerR family regulatory protein; C-5 cytosine-specific DNA methylase; TIGRFAM: DNA-methyltransferase (dcm); DNA binding domain, excisionase family. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.616 |
| ADR21748.1 | rpoC | Ftrac_1760 | Ftrac_3026 | DNA-cytosine methyltransferase; COGs: COG0270 Site-specific DNA methylase; InterPro IPR001525: IPR000551: IPR018117; KEGG: wch:wcw_1690 C-5 cytosine-specific DNA methylase; PFAM: C-5 cytosine-specific DNA methylase; regulatory protein MerR; PRIAM: DNA (cytosine-5-)-methyltransferase; SPTR: Cytosine-specific methyltransferase; TIGRFAM: DNA-cytosine methyltransferase; PFAM: MerR family regulatory protein; C-5 cytosine-specific DNA methylase; TIGRFAM: DNA-methyltransferase (dcm); DNA binding domain, excisionase family. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.532 |
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