STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADR20232.1tRNA-hydroxylase; COGs: COG4445 Hydroxylase for synthesis of 2-methylthio-cis-ribozeatin in tRNA; InterPro IPR010386; KEGG: sde:Sde_2626 tRNA-(ms(2)io(6)A)-hydroxylase; PFAM: tRNA-hydroxylase; SPTR: TRNA (Ms(2)io(6)A)-hydroxylase; PFAM: tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE). (194 aa)    
Predicted Functional Partners:
ADR20233.1
Protein of unknown function DUF179; COGs: COG1678 Putative transcriptional regulator protein; InterPro IPR003774; KEGG: dfe:Dfer_4074 protein of unknown function DUF179; PFAM: protein of unknown function DUF179; SPTR: Putative uncharacterized protein; PFAM: Uncharacterized ACR, COG1678; Belongs to the UPF0301 (AlgH) family.
       0.775
ADR20230.1
Glycosyl transferase family 2; InterPro IPR001173; KEGG: ppd:Ppro_0504 hypothetical protein; PFAM: glycosyl transferase family 2; SPTR: Putative uncharacterized protein; PFAM: Glycosyl transferase family 2.
 
     0.672
ADR20234.1
InterPro IPR007139; KEGG: sli:Slin_2892 protein of unknown function DUF349; PFAM: protein of unknown function DUF349; SPTR: Putative uncharacterized protein; PFAM: Domain of Unknown Function (DUF349).
       0.593
pdxH
Pyridoxamine 5'-phosphate oxidase; Catalyzes the oxidation of either pyridoxine 5'-phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP).
       0.540
ADR20183.1
KEGG: tdn:Suden_0109 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.409
Your Current Organism:
Marivirga tractuosa
NCBI taxonomy Id: 643867
Other names: Flexibacter tractuosus DSM 4126, Flexibacter tractuosus IFO 15989, M. tractuosa DSM 4126, Marivirga tractuosa DSM 4126, Marivirga tractuosa IFO 15989, Marivirga tractuosa str. DSM 4126, Marivirga tractuosa strain DSM 4126
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