STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADR20290.1KEGG: fph:Fphi_1631 hypothetical protein; SPTR: Putative uncharacterized protein. (146 aa)    
Predicted Functional Partners:
ADR20291.1
KEGG: osa:4339641 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.615
rpsR
SSU ribosomal protein S18P; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.
       0.526
rpsF
SSU ribosomal protein S6P; Binds together with S18 to 16S ribosomal RNA.
       0.526
rplI
LSU ribosomal protein L9P; Binds to the 23S rRNA.
       0.484
ADR20292.1
PAS sensor protein; InterPro IPR013655: IPR001610: IPR000014: IPR000700; KEGG: cpi:Cpin_0325 GAF sensor hybrid histidine kinase; PFAM: PAS fold-3 domain protein; SMART: PAC repeat-containing protein; SPTR: PAS domain S-box protein; TIGRFAM: PAS sensor protein; PFAM: PAS fold; TIGRFAM: PAS domain S-box.
       0.428
Your Current Organism:
Marivirga tractuosa
NCBI taxonomy Id: 643867
Other names: Flexibacter tractuosus DSM 4126, Flexibacter tractuosus IFO 15989, M. tractuosa DSM 4126, Marivirga tractuosa DSM 4126, Marivirga tractuosa IFO 15989, Marivirga tractuosa str. DSM 4126, Marivirga tractuosa strain DSM 4126
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