STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADR20370.1KEGG: ate:Athe_1020 hypothetical protein; SPTR: Putative uncharacterized protein. (83 aa)    
Predicted Functional Partners:
ADR20371.1
Geranylgeranyl reductase; COGs: COG0644 Dehydrogenase (flavoprotein); InterPro IPR011777: IPR003042: IPR008671; KEGG: cpi:Cpin_0830 geranylgeranyl reductase; PFAM: Lycopene beta and epsilon cyclase; SPTR: Geranylgeranyl reductase; TIGRFAM: geranylgeranyl reductase; PFAM: FAD binding domain; TIGRFAM: geranylgeranyl reductase family.
       0.773
ADR20372.1
KEGG: rbi:RB2501_05435 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: BNR/Asp-box repeat.
       0.522
ADR20367.1
Putative membrane protein; InterPro IPR019861; KEGG: fjo:Fjoh_3477 hypothetical protein; SPTR: Putative uncharacterized protein; TIGRFAM: putative membrane protein; PFAM: Protein of unknown function (DUF3308); TIGRFAM: Bacteroidetes-specific putative membrane protein.
       0.472
ADR20368.1
WD40-like beta Propeller containing protein; InterPro IPR011659: IPR013026; KEGG: fjo:Fjoh_4540 OmpA/MotB domain-containing protein; PFAM: WD40-like beta Propeller containing protein; SPTR: Immunogenic 75 kDa protein PG4, putative; PFAM: WD40-like Beta Propeller Repeat.
       0.472
ADR20369.1
COGs: COG0642 Signal transduction histidine kinase; InterPro IPR004358: IPR003661: IPR003594: IPR005467; KEGG: chu:CHU_2577 sensor histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SPTR: Response Regulator Receiver Signal Transduction Histidine Kinase; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
       0.472
Your Current Organism:
Marivirga tractuosa
NCBI taxonomy Id: 643867
Other names: Flexibacter tractuosus DSM 4126, Flexibacter tractuosus IFO 15989, M. tractuosa DSM 4126, Marivirga tractuosa DSM 4126, Marivirga tractuosa IFO 15989, Marivirga tractuosa str. DSM 4126, Marivirga tractuosa strain DSM 4126
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