STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADR20435.1KEGG: vvi:100248376 hypothetical protein LOC100248376; SPTR: Whole genome shotgun sequence of line PN40024, scaffold_46.assembly12x. (103 aa)    
Predicted Functional Partners:
ADR20432.1
DNA-cytosine methyltransferase; COGs: COG0270 Site-specific DNA methylase; InterPro IPR001525: IPR018117; KEGG: fps:FP2274 type II modification methyltransferase HpaII; PFAM: C-5 cytosine-specific DNA methylase; SPTR: Cytosine-specific methyltransferase; TIGRFAM: DNA-cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase; TIGRFAM: DNA-methyltransferase (dcm).
       0.434
ADR20433.1
KEGG: tet:TTHERM_00691830 hypothetical protein; SPTR: Pantoate-beta-alanine ligase.
       0.434
ADR20434.1
InterPro IPR019062; KEGG: btk:BT9727_0842 type II restriction enzyme HpaII (endonuclease HpaII); PFAM: Restriction endonuclease, type II, HpaII; PRIAM: Type II site-specific deoxyribonuclease; SPTR: Type II restriction enzyme HpaII (Endonuclease HpaII); PFAM: HpaII restriction endonuclease.
       0.434
Your Current Organism:
Marivirga tractuosa
NCBI taxonomy Id: 643867
Other names: Flexibacter tractuosus DSM 4126, Flexibacter tractuosus IFO 15989, M. tractuosa DSM 4126, Marivirga tractuosa DSM 4126, Marivirga tractuosa IFO 15989, Marivirga tractuosa str. DSM 4126, Marivirga tractuosa strain DSM 4126
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