STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADR20624.1COGs: COG0726 xylanase/chitin deacetylase; InterPro IPR002509; KEGG: cat:CA2559_01375 polysaccharide deacetylase; PFAM: polysaccharide deacetylase; SPTR: GlcNAc deacetylase-related protein, carbohydrate esterase family 4 protein; PFAM: Polysaccharide deacetylase. (212 aa)    
Predicted Functional Partners:
ADR20623.1
COGs: COG1215 Glycosyltransferase probably involved in cell wall biogenesis; InterPro IPR001173; KEGG: sli:Slin_2236 glycosyl transferase family 2; PFAM: glycosyl transferase family 2; SPTR: Glycosyl transferase family 2; PFAM: Glycosyl transferase family 2.
  
  
 0.861
ADR20625.1
Protein serine/threonine phosphatase; COGs: COG2208 Serine phosphatase RsbU regulator of sigma subunit; InterPro IPR001932: IPR010822; KEGG: chu:CHU_2179 sigma factor regulation protein; PFAM: Stage II sporulation protein E; SMART: protein phosphatase 2C domain protein; SPTR: Putative regulatory protein; PFAM: Stage II sporulation protein E (SpoIIE).
       0.800
ADR20621.1
Asparaginase; COGs: COG0252 L-asparaginase/ Glu-tRNAGln amidotransferase subunit D; InterPro IPR020827: IPR006034: IPR006033; KEGG: dfe:Dfer_5475 L-asparaginase, type I; PFAM: Asparaginase/glutaminase; PRIAM: 1-alkyl-2-acetylglycerophosphocholine esterase; SPTR: L-asparaginase I; TIGRFAM: L-asparaginase, type I; PFAM: Asparaginase; TIGRFAM: L-asparaginases, type I.
       0.799
ADR20622.1
Hydrolase, TatD family; COGs: COG0084 Mg-dependent DNase; InterPro IPR012278: IPR001130: IPR015991; KEGG: vvu:VV1_0903 putative Mg-dependent DNase; PFAM: TatD-related deoxyribonuclease; SPTR: Deoxyribonuclease, TatD family; TIGRFAM: hydrolase, TatD family; PFAM: TatD related DNase; TIGRFAM: hydrolase, TatD family.
       0.799
ADR20320.1
COGs: COG1215 Glycosyltransferase probably involved in cell wall biogenesis; InterPro IPR001173; KEGG: phe:Phep_1431 glycosyl transferase family 2; PFAM: glycosyl transferase family 2; SPTR: Putative uncharacterized protein; PFAM: Glycosyl transferase family 2.
 
  
 0.560
ADR20631.1
COGs: COG1215 Glycosyltransferase probably involved in cell wall biogenesis; InterPro IPR001173; KEGG: sli:Slin_2238 glycosyl transferase family 2; PFAM: glycosyl transferase family 2; SPTR: Glycosyl transferase, group 2 family protein; PFAM: Glycosyl transferase family 2.
 
  
 0.554
ADR20626.1
Peptidase M10A and M12B matrixin and adamalysin; InterPro IPR001818; KEGG: rbi:RB2501_15574 predicted extracellular metal-dependent peptidase; PFAM: peptidase M10A and M12B matrixin and adamalysin; SPTR: Putative uncharacterized protein.
       0.505
rplJ
LSU ribosomal protein L10P; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.
  
     0.402
Your Current Organism:
Marivirga tractuosa
NCBI taxonomy Id: 643867
Other names: Flexibacter tractuosus DSM 4126, Flexibacter tractuosus IFO 15989, M. tractuosa DSM 4126, Marivirga tractuosa DSM 4126, Marivirga tractuosa IFO 15989, Marivirga tractuosa str. DSM 4126, Marivirga tractuosa strain DSM 4126
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