STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADR20638.1MATE efflux family protein; COGs: COG0534 Na+-driven multidrug efflux pump; InterPro IPR002528; KEGG: cat:CA2559_03665 C-5 cytosine-specific DNA methylase:multi antimicrobial extrusion (MatE) protein; PFAM: multi antimicrobial extrusion protein MatE; SPTR: C-5 cytosine-specific DNA methylase:Multi antimicrobial extrusion (MatE) protein; TIGRFAM: MATE efflux family protein; PFAM: MatE; TIGRFAM: putative efflux protein, MATE family. (449 aa)    
Predicted Functional Partners:
ADR20637.1
KEGG: caa:Caka_0930 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.634
ADR22060.1
Glyceraldehyde-3-phosphate dehydrogenase, type II; COGs: COG0057 Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase; InterPro IPR020830: IPR006436: IPR020831: IPR020828; KEGG: zpr:ZPR_3400 glyceraldehyde-3-phosphate dehydrogenase; PFAM: Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain; PRIAM: Glyceraldehyde-3-phosphate dehydrogenase (NAD(P)(+)) (phosphorylating); SPTR: Glyceraldehyde-3-phosphate dehydrogenase; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type II; PFAM: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; TIGRFAM: [...]
  
  
 0.572
ADR21461.1
COGs: COG1562 Phytoene/squalene synthetase; InterPro IPR002060: IPR019845; KEGG: sli:Slin_5959 squalene/phytoene synthase; PFAM: Squalene/phytoene synthase; PRIAM: Phytoene synthase; SPTR: Phytoene synthetase; PFAM: Squalene/phytoene synthase.
   
 
 0.568
ADR20857.1
COGs: COG0539 Ribosomal protein S1; InterPro IPR003029: IPR000110; KEGG: sli:Slin_5663 RNA binding S1 domain protein; PFAM: RNA binding S1 domain protein; SPTR: 30S ribosomal protein S1; PFAM: S1 RNA binding domain; TIGRFAM: ribosomal protein S1.
  
    0.506
ADR20639.1
TonB-dependent receptor plug; COGs: COG4771 Outer membrane receptor for ferrienterochelin and colicins; InterPro IPR012910: IPR000531; KEGG: phe:Phep_3536 TonB-dependent receptor plug; PFAM: TonB-dependent receptor plug; TonB-dependent receptor; SPTR: TonB-dependent receptor plug; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain.
       0.498
ADR20081.1
COGs: COG0057 Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase; InterProIPR020832: IPR020828: IPR020829: IPR020831: IPR 006424: IPR020830; KEGG: sli:Slin_1998 glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain; Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain; PRIAM: Glyceraldehyde-3-phosphate dehydrogenase (phosphorylating); SPTR: Glyceraldehyde-3-phosphate dehydrogenase, type I; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: Glyceraldehyde 3-phosphate dehydroge [...]
   
  
 0.488
ADR21147.1
MATE efflux family protein; COGs: COG0534 Na+-driven multidrug efflux pump; InterPro IPR002528; KEGG: cpi:Cpin_7238 MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; SPTR: Mate efflux family protein; TIGRFAM: MATE efflux family protein; PFAM: MatE; TIGRFAM: putative efflux protein, MATE family.
  
     0.446
ADR20636.1
COGs: COG0596 hydrolase or acyltransferase (alpha/beta hydrolase superfamily); InterPro IPR000073; KEGG: cte:CT1253 alpha/beta fold family hydrolase; PFAM: alpha/beta hydrolase fold; SPTR: Hydrolase, alpha/beta hydrolase fold family; PFAM: alpha/beta hydrolase fold.
       0.434
Your Current Organism:
Marivirga tractuosa
NCBI taxonomy Id: 643867
Other names: Flexibacter tractuosus DSM 4126, Flexibacter tractuosus IFO 15989, M. tractuosa DSM 4126, Marivirga tractuosa DSM 4126, Marivirga tractuosa IFO 15989, Marivirga tractuosa str. DSM 4126, Marivirga tractuosa strain DSM 4126
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