STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADR20701.1Mandelate racemase/muconate lactonizing protein; COGs: COG4948 L-alanine-DL-glutamate epimerase; InterPro IPR018110: IPR013342; KEGG: sli:Slin_2020 mandelate racemase/muconate lactonizing protein; PFAM: Mandelate racemase/muconate lactonizing protein; SPTR: Chloromuconate cycloisomerase; PFAM: Mandelate racemase / muconate lactonizing enzyme, C-terminal domain; TIGRFAM: o-succinylbenzoic acid (OSB) synthetase. (357 aa)    
Predicted Functional Partners:
ADR20518.1
COGs: COG0318 Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II; InterPro IPR000873: IPR020845; KEGG: zpr:ZPR_3061 O-succinylbenzoyl-CoA synthetase; PFAM: AMP-dependent synthetase and ligase; SPTR: O-succinylbenzoic acid-CoA ligase; PFAM: AMP-binding enzyme.
    0.980
menD
2-succinyl-6-hydroxy-2,4-cyclohexadiene-1- carboxylic acid synthase/2-oxoglutarate decarboxylase; Catalyzes the thiamine diphosphate-dependent decarboxylation of 2-oxoglutarate and the subsequent addition of the resulting succinic semialdehyde-thiamine pyrophosphate anion to isochorismate to yield 2- succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Belongs to the TPP enzyme family. MenD subfamily.
   
 0.849
ADR21124.1
Chorismate binding protein; COGs: COG1169 Isochorismate synthase; InterPro IPR015890; KEGG: dfe:Dfer_5138 chorismate binding-like protein; PFAM: Chorismate binding-like; SPTR: Putative uncharacterized protein; PFAM: chorismate binding enzyme.
 
   
 0.822
menB
1,4-Dihydroxy-2-naphthoate synthase; Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4-dihydroxy-2- naphthoyl-CoA (DHNA-CoA); Belongs to the enoyl-CoA hydratase/isomerase family. MenB subfamily.
 
   
 0.768
menA
1,4-dihydroxy-2-naphtoate prenyltransferase; Conversion of 1,4-dihydroxy-2-naphthoate (DHNA) to demethylmenaquinone (DMK); Belongs to the MenA family. Type 1 subfamily.
 
   
 0.721
ADR23685.1
Protein of unknown function DUF1599; InterPro IPR011630; KEGG: chu:CHU_3224 hypothetical protein; PFAM: protein of unknown function DUF1599; SPTR: Putative uncharacterized protein; PFAM: Domain of Unknown Function (DUF1599).
  
     0.606
ADR22025.1
Hypothetical protein; COGs: COG2971 N-acetylglucosamine kinase; KEGG: dfe:Dfer_3564 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: BadF/BadG/BcrA/BcrD ATPase family.
 
    0.580
queA
S-adenosylmethionine/tRNA-ribosyltransferase isomerase; Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA).
       0.559
ADR20703.1
COGs: COG3264 Small-conductance mechanosensitive channel; InterPro IPR006685; KEGG: plt:Plut_0101 putative AefA; PFAM: MscS Mechanosensitive ion channel; SPTR: Putative uncharacterized protein; PFAM: Mechanosensitive ion channel.
       0.517
ADR23059.1
KEGG: phe:Phep_3738 N-acetylglucosamine kinase; SPTR: N-acetylglucosamine kinase.
 
    0.515
Your Current Organism:
Marivirga tractuosa
NCBI taxonomy Id: 643867
Other names: Flexibacter tractuosus DSM 4126, Flexibacter tractuosus IFO 15989, M. tractuosa DSM 4126, Marivirga tractuosa DSM 4126, Marivirga tractuosa IFO 15989, Marivirga tractuosa str. DSM 4126, Marivirga tractuosa strain DSM 4126
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