STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADR20775.1Metallophosphoesterase; COGs: COG1407 ICC-like phosphoesterase; InterPro IPR004843; KEGG: chu:CHU_3526 ICC-like phosphoesterase; PFAM: metallophosphoesterase; SPTR: Putative uncharacterized protein; PFAM: Calcineurin-like phosphoesterase; TIGRFAM: putative phosphoesterase, SbcD/Mre11-related. (215 aa)    
Predicted Functional Partners:
ADR20773.1
ATP dependent helicase, Lhr family; COGs: COG1201 Lhr-like helicase; InterProIPR014021: IPR001650: IPR014001: IPR017170: IPR 011545: IPR013701; KEGG: gfo:GFO_3528 DEAD box helicase family protein; PFAM: DEAD/H associated domain protein; DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein; SPTR: DEAD box helicase family protein; PFAM: Helicase conserved C-terminal domain; DEAD/H associated; DEAD/DEAH box helicase.
 
    0.932
ADR20772.1
COGs: COG1793 ATP-dependent DNA ligase; InterPro IPR016059: IPR012310: IPR012309; KEGG: cpi:Cpin_6857 ATP dependent DNA ligase; PFAM: ATP dependent DNA ligase; ATP dependent DNA ligase domain protein; SPTR: ATP dependent DNA ligase; PFAM: ATP dependent DNA ligase domain; DNA ligase N terminus; ATP dependent DNA ligase C terminal region; TIGRFAM: DNA ligase I, ATP-dependent (dnl1).
 
   
 0.931
ADR21126.1
Metallo-beta-lactamase; COGs: COG1236 exonuclease of the beta-lactamase fold involved in RNA processing; KEGG: zpr:ZPR_0470 metallo-beta-lactamase; SPTR: Metallo-beta-lactamase.
 
     0.797
ADR20774.1
Protein of unknown function DUF2147; InterPro IPR019223; KEGG: cts:Ctha_2007 hypothetical protein; PFAM: Protein of unknown function DUF2147; SPTR: Putative uncharacterized protein; PFAM: Uncharacterized protein conserved in bacteria (DUF2147).
       0.777
ADR20771.1
Histidine kinase HAMP region domain protein; InterPro IPR003660; KEGG: ava:Ava_4696 GAF sensor hybrid histidine kinase; PFAM: histidine kinase HAMP region domain protein; SMART: histidine kinase HAMP region domain protein; SPTR: GAF Sensor Hybrid Histidine Kinase, putative; PFAM: HAMP domain; TIGRFAM: PAS domain S-box.
       0.523
ADR20776.1
RNA polymerase, sigma-24 subunit, ECF subfamily; COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627: IPR013249: IPR014284; KEGG: chu:CHU_0953 RNA polymerase, sigma-E factor; heat shock and oxidative stress; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; SPTR: DNA-directed RNA polymerase specialized sigma subunit, putative; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; Belongs to the sigma-70 factor family. E [...]
       0.480
ADR20777.1
KEGG: chu:CHU_0952 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.480
Your Current Organism:
Marivirga tractuosa
NCBI taxonomy Id: 643867
Other names: Flexibacter tractuosus DSM 4126, Flexibacter tractuosus IFO 15989, M. tractuosa DSM 4126, Marivirga tractuosa DSM 4126, Marivirga tractuosa IFO 15989, Marivirga tractuosa str. DSM 4126, Marivirga tractuosa strain DSM 4126
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