STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADR20891.1COGs: COG0507 ATP-dependent exoDNAse (exonuclease V) alpha subunit - helicase superfamily I member; KEGG: dfe:Dfer_0232 ATP-dependent exoDNAse (exonuclease V); SPTR: ATP-dependent exoDNAse (Exonuclease V); PFAM: Uncharacterized conserved protein (DUF2075). (467 aa)    
Predicted Functional Partners:
ADR20892.1
Thioesterase superfamily protein; COGs: COG2050 Uncharacterized protein possibly involved in aromatic compounds catabolism; InterPro IPR006683: IPR003736; KEGG: pdi:BDI_1501 hypothetical protein; PFAM: thioesterase superfamily protein; SPTR: Putative uncharacterized protein; PFAM: Thioesterase superfamily; TIGRFAM: uncharacterized domain 1.
 
     0.813
ADR21537.1
UvrD/REP helicase; COGs: COG1074 ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains); InterPro IPR000212: IPR014016: IPR014017; KEGG: pdi:BDI_2571 ATP-dependent helicase; PFAM: UvrD/REP helicase; SPTR: UvrD/REP helicase domain protein; PFAM: UvrD/REP helicase.
 
 
 0.749
ADR21415.1
DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]
  
 
 0.699
ADR20893.1
NUDIX hydrolase; COGs: COG1051 ADP-ribose pyrophosphatase; InterPro IPR000086: IPR020476; KEGG: chu:CHU_2664 NUDIX hydrolase family protein; PFAM: NUDIX hydrolase; SPTR: NTP pyrophosphohydrolase including oxidative damage repair enzyme; PFAM: NUDIX domain.
  
  
 0.621
ADR20633.1
KEGG: cat:CA2559_12793 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: BlaR1 peptidase M56.
  
     0.618
ADR20890.1
InterPro IPR011467; KEGG: sli:Slin_6328 protein of unknown function DUF1573; PFAM: protein of unknown function DUF1573; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1573).
       0.541
ADR20894.1
KEGG: gfo:GFO_1825 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.526
ADR20895.1
KEGG: chu:CHU_2666 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.526
coaD
Phosphopantetheine adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family.
       0.526
ADR21026.1
KEGG: dfe:Dfer_2421 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Type I restriction enzyme R protein N terminus (HSDR_N).
  
     0.506
Your Current Organism:
Marivirga tractuosa
NCBI taxonomy Id: 643867
Other names: Flexibacter tractuosus DSM 4126, Flexibacter tractuosus IFO 15989, M. tractuosa DSM 4126, Marivirga tractuosa DSM 4126, Marivirga tractuosa IFO 15989, Marivirga tractuosa str. DSM 4126, Marivirga tractuosa strain DSM 4126
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