STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADR20926.1KEGG: fjo:Fjoh_1606 hypothetical protein; SPTR: Hypothetical lipoprotein. (165 aa)    
Predicted Functional Partners:
ADR20925.1
CMP/dCMP deaminase zinc-binding protein; COGs: COG2131 Deoxycytidylate deaminase; InterPro IPR016192: IPR016473: IPR002125; KEGG: chu:CHU_2215 cytidine/deoxycytidylate deaminase (dCMP deaminase); PFAM: CMP/dCMP deaminase zinc-binding; SPTR: DCMP deaminase, putative; PFAM: Cytidine and deoxycytidylate deaminase zinc-binding region.
       0.531
ADR20927.1
Hypothetical protein; KEGG: cal:CaO19.813 low complexity orf; SPTR: Lipoprotein, putative.
      
0.437
Your Current Organism:
Marivirga tractuosa
NCBI taxonomy Id: 643867
Other names: Flexibacter tractuosus DSM 4126, Flexibacter tractuosus IFO 15989, M. tractuosa DSM 4126, Marivirga tractuosa DSM 4126, Marivirga tractuosa IFO 15989, Marivirga tractuosa str. DSM 4126, Marivirga tractuosa strain DSM 4126
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