STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADR20938.1PASTA domain containing protein; COGs: COG2815 conserved hypothetical protein; InterPro IPR005543; KEGG: dfe:Dfer_2925 PASTA domain containing protein; PFAM: PASTA domain containing protein; SMART: PASTA domain containing protein; SPTR: PASTA domain containing protein; PFAM: PASTA domain. (262 aa)    
Predicted Functional Partners:
ddl
D-alanine--D-alanine ligase; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family.
     
 0.820
ADR20939.1
KEGG: dfe:Dfer_2924 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.802
ADR21492.1
KEGG: shi:Shel_11830 hypothetical protein; SPTR: Putative uncharacterized protein.
   
 
 0.744
ADR23269.1
KEGG: sli:Slin_4754 hypothetical protein; SPTR: Putative uncharacterized protein.
 
  
 0.631
ADR23304.1
Peptidase M23; COGs: COG4942 Membrane-bound metallopeptidase; InterPro IPR016047; KEGG: chu:CHU_0023 M23/M37 family peptidase; PFAM: Peptidase M23; SPTR: Possible membrane protein; possible peptidase, M23/M37 family; PFAM: Peptidase family M23.
  
     0.621
ADR22111.1
KEGG: chu:CHU_0307 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF2723).
  
     0.594
ADR22487.1
Tetratricopeptide TPR_1 repeat-containing protein; InterPro IPR019734: IPR013026: IPR001440; KEGG: sli:Slin_5634 tetratricopeptide TPR_2 repeat protein; PFAM: Tetratricopeptide TPR_1 repeat-containing protein; SPTR: Tetratricopeptide TPR_2 repeat protein.
  
     0.590
ADR20936.1
KEGG: cat:CA2559_01750 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Pregnancy-associated plasma protein-A.
  
 
 0.574
ADR20761.1
KEGG: sli:Slin_0989 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.561
ADR22335.1
KEGG: aas:Aasi_1341 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.557
Your Current Organism:
Marivirga tractuosa
NCBI taxonomy Id: 643867
Other names: Flexibacter tractuosus DSM 4126, Flexibacter tractuosus IFO 15989, M. tractuosa DSM 4126, Marivirga tractuosa DSM 4126, Marivirga tractuosa IFO 15989, Marivirga tractuosa str. DSM 4126, Marivirga tractuosa strain DSM 4126
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