STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADR20986.1KEGG: sto:ST0652 hypothetical protein; SPTR: Putative uncharacterized protein. (141 aa)    
Predicted Functional Partners:
ADR20987.1
KEGG: dma:DMR_38040 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: BNR/Asp-box repeat.
       0.773
ADR20988.1
Na-Ca exchanger/integrin-beta4; InterPro IPR003644; KEGG: cpi:Cpin_5094 conserved repeat domain protein; PFAM: Na-Ca exchanger/integrin-beta4; SPTR: Conserved repeat domain protein; PFAM: Calx-beta domain.
       0.468
ADR20989.1
KEGG: cpi:Cpin_0370 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.465
ADR20990.1
TonB-dependent receptor plug; InterPro IPR012910: IPR000531; KEGG: gfo:GFO_2846 TonB-dependent outer membrane receptor; PFAM: TonB-dependent receptor plug; TonB-dependent receptor; SPTR: Outer membrane protein; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor.
       0.441
Your Current Organism:
Marivirga tractuosa
NCBI taxonomy Id: 643867
Other names: Flexibacter tractuosus DSM 4126, Flexibacter tractuosus IFO 15989, M. tractuosa DSM 4126, Marivirga tractuosa DSM 4126, Marivirga tractuosa IFO 15989, Marivirga tractuosa str. DSM 4126, Marivirga tractuosa strain DSM 4126
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