STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADR21183.1KEGG: tde:TDE0236 PilT domain-containing protein; SPTR: PIN domain protein. (137 aa)    
Predicted Functional Partners:
ADR21184.1
KEGG: zpr:ZPR_4526 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.789
ADR20728.1
KEGG: gfo:GFO_0860 hypothetical protein; SPTR: Putative uncharacterized protein.
 
     0.778
ADR20729.1
PilT protein domain protein; InterPro IPR002716; KEGG: gfo:GFO_0859 hypothetical protein; PFAM: PilT protein domain protein; SPTR: Putative uncharacterized protein; PFAM: PIN domain.
  
     0.775
hisB
COGs: COG0131 Imidazoleglycerol-phosphate dehydratase; InterPro IPR020565: IPR000807: IPR005954: IPR006543; KEGG: dfe:Dfer_2927 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; PFAM: imidazoleglycerol-phosphate dehydratase; PRIAM: Histidinol-phosphatase; SPTR: Imidazole glycerol-phosphate dehydratase/histidinol phosphatase; TIGRFAM: histidinol-phosphatase; histidinol-phosphate phosphatase family protein; PFAM: Polynucleotide kinase 3 phosphatase; Imidazoleglycerol-phosphate dehydratase; TIGRFAM: HAD-superfamily hydrolase, subfamily IIIA; histidinol-phosphate phosphatase [...]
       0.466
ADR21741.1
KEGG: zpr:ZPR_0704 transcriptional regulator/antitoxin, MazE; SPTR: Transcriptional regulator/antitoxin, MazE.
 
     0.464
Your Current Organism:
Marivirga tractuosa
NCBI taxonomy Id: 643867
Other names: Flexibacter tractuosus DSM 4126, Flexibacter tractuosus IFO 15989, M. tractuosa DSM 4126, Marivirga tractuosa DSM 4126, Marivirga tractuosa IFO 15989, Marivirga tractuosa str. DSM 4126, Marivirga tractuosa strain DSM 4126
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