STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADR21193.1GH3 auxin-responsive promoter; InterPro IPR004993; KEGG: dfe:Dfer_0473 GH3 auxin-responsive promoter; PFAM: GH3 auxin-responsive promoter; SPTR: Putative plant auxin-regulated protein; PFAM: GH3 auxin-responsive promoter. (518 aa)    
Predicted Functional Partners:
ADR21192.1
Lysine exporter protein (LYSE/YGGA); COGs: COG1280 Putative threonine efflux protein; InterPro IPR001123; KEGG: zpr:ZPR_0018 LysE type amino acid translocator; PFAM: Lysine exporter protein (LYSE/YGGA); SPTR: Translocator protein, LysE family; PFAM: LysE type translocator.
 
   
 0.906
ADR21191.1
KEGG: sli:Slin_2807 hypothetical protein; SPTR: Putative uncharacterized protein.
 
     0.807
ADR21174.1
Patatin; InterPro IPR002641; KEGG: chu:CHU_1718 hypothetical protein; PFAM: Patatin; SPTR: Putative uncharacterized protein; PFAM: Patatin-like phospholipase.
  
     0.606
ADR21194.1
Alanine racemase domain protein; Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis; Belongs to the pyridoxal phosphate-binding protein YggS/PROSC family.
       0.520
ADR21475.1
PUR-alpha/beta/gamma DNA/RNA-binding protein; InterPro IPR006628; KEGG: dfe:Dfer_4775 hypothetical protein; SMART: PUR-alpha/beta/gamma DNA/RNA-binding; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF3276).
  
     0.511
ADR20573.1
KEGG: chu:CHU_1553 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.453
ADR21118.1
KEGG: zpr:ZPR_2136 acyl-CoA reductase; SPTR: Putative uncharacterized protein; PFAM: Acyl-CoA reductase (LuxC).
 
 
 0.426
ADR22928.1
InterPro IPR003769; KEGG: chu:CHU_1046 hypothetical protein; PFAM: ATP-dependent Clp protease adaptor protein ClpS; SPTR: Putative uncharacterized protein; PFAM: ATP-dependent Clp protease adaptor protein ClpS.
  
     0.424
ADR20561.1
KEGG: cat:CA2559_09178 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.414
rpoZ
DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
 
     0.408
Your Current Organism:
Marivirga tractuosa
NCBI taxonomy Id: 643867
Other names: Flexibacter tractuosus DSM 4126, Flexibacter tractuosus IFO 15989, M. tractuosa DSM 4126, Marivirga tractuosa DSM 4126, Marivirga tractuosa IFO 15989, Marivirga tractuosa str. DSM 4126, Marivirga tractuosa strain DSM 4126
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.