STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADR21241.1KEGG: cpi:Cpin_3257 protein of unknown function DUF1200; SPTR: Lipoprotein, putative; PFAM: Protein of unknown function (DUF1200). (148 aa)    
Predicted Functional Partners:
ADR21242.1
DNA-N1-methyladenine dioxygenase; COGs: COG3145 Alkylated DNA repair protein; InterPro IPR005123; KEGG: fjo:Fjoh_1572 2OG-Fe(II) oxygenase; PFAM: 2OG-Fe(II) oxygenase; SPTR: Oxidoreductase, 2OG-Fe(II) oxygenase family protein; PFAM: 2OG-Fe(II) oxygenase superfamily.
       0.613
ADR21243.1
SOUL heme-binding protein; InterPro IPR006917; KEGG: cpb:Cphamn1_2389 SOUL heme-binding protein; PFAM: SOUL heme-binding protein; SPTR: Putative uncharacterized protein; PFAM: SOUL heme-binding protein.
       0.517
ADR21082.1
Signal peptide peptidase SppA, 67K type; COGs: COG0616 Periplasmic serine protease (ClpP class); InterPro IPR004634: IPR002142: IPR004635; KEGG: dfe:Dfer_2800 signal peptide peptidase SppA, 67K type; PFAM: peptidase S49; SPTR: Signal peptide peptidase SppA, 67K type; TIGRFAM: signal peptide peptidase SppA, 67K type; signal peptide peptidase SppA, 36K type; PFAM: Peptidase family S49; TIGRFAM: signal peptide peptidase SppA, 36K type; signal peptide peptidase SppA, 67K type.
   
    0.440
ADR22079.1
Hypothetical protein; InterPro IPR000589; KEGG: rbi:RB2501_04685 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.433
ADR22083.1
Rhodanese domain protein; InterPro IPR001763; KEGG: tbd:Tbd_1650 rhodanese-like protein; SMART: Rhodanese domain protein; SPTR: Rhodanese-like protein; PFAM: Rhodanese-like domain.
  
     0.409
Your Current Organism:
Marivirga tractuosa
NCBI taxonomy Id: 643867
Other names: Flexibacter tractuosus DSM 4126, Flexibacter tractuosus IFO 15989, M. tractuosa DSM 4126, Marivirga tractuosa DSM 4126, Marivirga tractuosa IFO 15989, Marivirga tractuosa str. DSM 4126, Marivirga tractuosa strain DSM 4126
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