STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADR21462.1COGs: COG1233 Phytoene dehydrogenase and related protein; InterPro IPR002937: IPR014105; KEGG: sli:Slin_5960 phytoene desaturase; PFAM: amine oxidase; SPTR: Phytoene desaturase; TIGRFAM: phytoene desaturase; PFAM: Flavin containing amine oxidoreductase; TIGRFAM: phytoene desaturase. (493 aa)    
Predicted Functional Partners:
ADR21461.1
COGs: COG1562 Phytoene/squalene synthetase; InterPro IPR002060: IPR019845; KEGG: sli:Slin_5959 squalene/phytoene synthase; PFAM: Squalene/phytoene synthase; PRIAM: Phytoene synthase; SPTR: Phytoene synthetase; PFAM: Squalene/phytoene synthase.
 
 0.999
ADR20399.1
InterPro IPR008671; KEGG: fjo:Fjoh_0926 lycopene beta and epsilon cyclase; PFAM: Lycopene beta and epsilon cyclase; SPTR: Lycopene beta and epsilon cyclase; PFAM: Lycopene cyclase protein.
 
 
 0.934
ADR21459.1
Fatty acid hydroxylase; InterPro IPR006694; KEGG: sli:Slin_5702 fatty acid hydroxylase; PFAM: fatty acid hydroxylase; SPTR: Fatty acid hydroxylase; PFAM: Fatty acid hydroxylase superfamily.
 
   
 0.932
ispH
Hydroxymethylbutenyl pyrophosphate reductase; Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP/MEP pathway for isoprenoid precursor biosynthesis. Belongs to the IspH family.
     
 0.782
ADR21463.1
RNA polymerase, sigma-24 subunit, ECF subfamily; COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627: IPR013249: IPR014284; KEGG: sli:Slin_5961 RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; SPTR: RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family.
       0.776
ADR21464.1
Transcriptional regulator, MerR family; COGs: COG0789 transcriptional regulator protein; InterPro IPR000551; KEGG: sli:Slin_5173 transcriptional regulator, MerR family; PFAM: regulatory protein MerR; SMART: regulatory protein MerR; SPTR: Transcriptional regulator, MerR family; PFAM: MerR family regulatory protein.
 
  
 0.707
ADR21962.1
Protein of unknown function DUF422; InterPro IPR007354; KEGG: afl:Aflv_2198 hypothetical protein; PFAM: protein of unknown function DUF422; SPTR: Membrane protein, putative; PFAM: Protein of unknown function (DUF422).
 
   
 0.584
ADR21458.1
Hypothetical protein; KEGG: cdl:CDR20291_1513 putative sodium extrusion ABC transporter, permease protein; SPTR: Putative sodium extrusion ABC transporter,permease protein.
       0.576
ADR20071.1
COGs: COG0415 Deoxyribodipyrimidine photolyase; InterPro IPR002081: IPR006050: IPR005101: IPR018394; KEGG: dfe:Dfer_4249 deoxyribodipyrimidine photo-lyase; PFAM: DNA photolyase FAD-binding; DNA photolyase domain protein; PRIAM: Deoxyribodipyrimidine photo-lyase; SPTR: Deoxyribodipyrimidine photolyase-class I; PFAM: FAD binding domain of DNA photolyase; DNA photolyase.
 
  
 0.549
ADR22577.1
Cryptochrome, DASH family; COGs: COG0415 Deoxyribodipyrimidine photolyase; InterPro IPR014133: IPR006050: IPR005101: IPR002081; KEGG: amr:AM1_2428 deoxyribodipyrimidine photolyase; PFAM: DNA photolyase FAD-binding; DNA photolyase domain protein; SPTR: Cryptochrome, DASH family; TIGRFAM: cryptochrome, DASH family; PFAM: FAD binding domain of DNA photolyase; DNA photolyase; TIGRFAM: cryptochrome, DASH family.
 
  
 0.425
Your Current Organism:
Marivirga tractuosa
NCBI taxonomy Id: 643867
Other names: Flexibacter tractuosus DSM 4126, Flexibacter tractuosus IFO 15989, M. tractuosa DSM 4126, Marivirga tractuosa DSM 4126, Marivirga tractuosa IFO 15989, Marivirga tractuosa str. DSM 4126, Marivirga tractuosa strain DSM 4126
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