STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADR21679.1Radical SAM domain protein; COGs: COG0535 Fe-S oxidoreductase; InterPro IPR007197: IPR006638; KEGG: sli:Slin_4391 radical SAM domain protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; SPTR: Radical SAM domain protein; PFAM: Radical SAM superfamily. (326 aa)    
Predicted Functional Partners:
ddl
D-alanine--D-alanine ligase; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family.
  
    0.583
ADR20623.1
COGs: COG1215 Glycosyltransferase probably involved in cell wall biogenesis; InterPro IPR001173; KEGG: sli:Slin_2236 glycosyl transferase family 2; PFAM: glycosyl transferase family 2; SPTR: Glycosyl transferase family 2; PFAM: Glycosyl transferase family 2.
 
   
 0.568
ADR22172.1
KEGG: dfe:Dfer_4669 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.557
ADR22656.1
Polysaccharide export protein; COGs: COG1596 Periplasmic protein involved in polysaccharide export; InterPro IPR003715; KEGG: chu:CHU_3844 polysaccharide export periplasmic protein; PFAM: polysaccharide export protein; SPTR: Periplasmic protein involved in polysaccharide export; manually curated; PFAM: Polysaccharide biosynthesis/export protein.
 
     0.553
ADR22001.1
KEGG: sli:Slin_5353 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.545
ADR21973.1
KEGG: srm:SRM_00019 hypothetical protein; SPTR: Lipoprotein, putative.
  
     0.536
ADR20480.1
KEGG: sli:Slin_1651 hypothetical protein; SPTR: Lipoprotein, putative.
  
     0.506
ADR21059.1
KEGG: sli:Slin_5723 transcriptional regulator, TetR family; SPTR: Transcriptional regulator, TetR family; PFAM: Bacterial regulatory proteins, tetR family.
 
     0.487
ADR21680.1
KEGG: chu:CHU_3613 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.484
nqrF
NADH:ubiquinone oxidoreductase, subunit F; NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm. The first step is catalyzed by NqrF, which accepts electrons from NADH and reduces ubiquinone-1 to ubisemiquinone by a one-electron transfer pathway.
       0.477
Your Current Organism:
Marivirga tractuosa
NCBI taxonomy Id: 643867
Other names: Flexibacter tractuosus DSM 4126, Flexibacter tractuosus IFO 15989, M. tractuosa DSM 4126, Marivirga tractuosa DSM 4126, Marivirga tractuosa IFO 15989, Marivirga tractuosa str. DSM 4126, Marivirga tractuosa strain DSM 4126
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