STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADR21680.1KEGG: chu:CHU_3613 hypothetical protein; SPTR: Putative uncharacterized protein. (172 aa)    
Predicted Functional Partners:
ADR20261.1
KEGG: fjo:Fjoh_0606 YD repeat-containing protein; SPTR: YD repeat protein; TIGRFAM: RHS repeat-associated core domain.
  
     0.618
ADR20545.1
YD repeat protein; InterPro IPR006530; KEGG: phe:Phep_1097 YD repeat protein; PFAM: YD repeat-containing protein; SPTR: Putative uncharacterized protein; TIGRFAM: YD repeat protein; PFAM: RHS Repeat; TIGRFAM: YD repeat (two copies).
  
     0.595
ADR20259.1
Conserved repeat domain protein; InterPro IPR006530: IPR001434; KEGG: cpi:Cpin_4789 YD repeat protein; PFAM: YD repeat-containing protein; SPTR: Putative uncharacterized protein; TIGRFAM: conserved repeat domain protein; YD repeat protein; TIGRFAM: YD repeat (two copies); conserved repeat domain.
  
     0.586
ADR20542.1
Hypothetical protein; InterPro IPR020003; KEGG: cpi:Cpin_1395 YD repeat protein; SPTR: Cell well associated RhsD protein; TIGRFAM: RHS repeat-associated core domain.
  
     0.508
ADR23180.1
KEGG: chu:CHU_0918 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.487
ADR21679.1
Radical SAM domain protein; COGs: COG0535 Fe-S oxidoreductase; InterPro IPR007197: IPR006638; KEGG: sli:Slin_4391 radical SAM domain protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; SPTR: Radical SAM domain protein; PFAM: Radical SAM superfamily.
       0.484
ADR20362.1
KEGG: dfe:Dfer_5116 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Phosphoribosyl-ATP pyrophosphohydrolase.
  
     0.472
ADR23356.1
CHASE2 domain protein; COGs: COG4252 transmembrane sensor domain; InterPro IPR007890; KEGG: chu:CHU_3026 hypothetical protein; PFAM: CHASE2 domain protein; SPTR: Putative uncharacterized protein; PFAM: CHASE2 domain.
  
     0.454
ADR22665.1
NUDIX hydrolase; InterPro IPR000086; KEGG: cpi:Cpin_0606 NUDIX hydrolase; PFAM: NUDIX hydrolase; SPTR: NUDIX hydrolase; PFAM: NUDIX domain.
 
     0.453
ADR20544.1
Hypothetical protein; InterPro IPR002328; KEGG: cpi:Cpin_1395 YD repeat protein; SPTR: Cell well associated RhsD protein; TIGRFAM: RHS repeat-associated core domain.
  
     0.444
Your Current Organism:
Marivirga tractuosa
NCBI taxonomy Id: 643867
Other names: Flexibacter tractuosus DSM 4126, Flexibacter tractuosus IFO 15989, M. tractuosa DSM 4126, Marivirga tractuosa DSM 4126, Marivirga tractuosa IFO 15989, Marivirga tractuosa str. DSM 4126, Marivirga tractuosa strain DSM 4126
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