STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADR21783.1Transposase IS3/IS911 family protein; InterPro IPR002514; KEGG: zpr:ZPR_4701 ISPsy11, transposase OrfA; PFAM: transposase IS3/IS911 family protein; SPTR: Transposase; PFAM: Transposase. (132 aa)    
Predicted Functional Partners:
ADR21784.1
Integrase catalytic region; COGs: COG2801 Transposase and inactivated derivatives; InterPro IPR001584; KEGG: zpr:ZPR_4711 integrase, catalytic region; PFAM: Integrase catalytic region; SPTR: Integrase, catalytic region; PFAM: Integrase core domain.
       0.768
ADR21782.1
Ribosomal large subunit pseudouridine synthase D; COGs: COG0564 Pseudouridylate synthase 23S RNA-specific; InterPro IPR006145; KEGG: phe:Phep_0707 pseudouridine synthase; PFAM: pseudouridine synthase; SPTR: Ribosomal large subunit pseudouridine synthase C; PFAM: RNA pseudouridylate synthase.
       0.531
Your Current Organism:
Marivirga tractuosa
NCBI taxonomy Id: 643867
Other names: Flexibacter tractuosus DSM 4126, Flexibacter tractuosus IFO 15989, M. tractuosa DSM 4126, Marivirga tractuosa DSM 4126, Marivirga tractuosa IFO 15989, Marivirga tractuosa str. DSM 4126, Marivirga tractuosa strain DSM 4126
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