STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
bshCProtein of unknown function UCP012535; COGs: COG4365 conserved hypothetical protein; InterPro IPR011199; KEGG: sli:Slin_5360 protein of unknown function UCP012535; PFAM: protein of unknown function UCP012535; SPTR: Putative uncharacterized protein; PFAM: Uncharacterized protein conserved in bacteria (DUF2317); Belongs to the BshC family. (521 aa)    
Predicted Functional Partners:
ADR21912.1
COGs: COG0212 5-formyltetrahydrofolate cyclo-ligase; InterPro IPR002698; KEGG: chu:CHU_0687 5-formyltetrahydrofolate cyclo-ligase; PFAM: 5-formyltetrahydrofolate cyclo-ligase; SPTR: 5-formyltetrahydrofolate cyclo-ligase; TIGRFAM: 5-formyltetrahydrofolate cyclo-ligase; PFAM: 5-formyltetrahydrofolate cyclo-ligase family; TIGRFAM: 5,10-methenyltetrahydrofolate synthetase.
       0.789
rimO
SSU ribosomal protein S12P methylthiotransferase; Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12; Belongs to the methylthiotransferase family. RimO subfamily.
       0.789
ADR20229.1
LmbE family protein; COGs: COG2120 conserved hypothetical protein LmbE homologs; InterPro IPR003737: IPR000276; KEGG: nve:NEMVE_v1g224788 hypothetical protein; PFAM: LmbE family protein; SPTR: GlcNAc-PI de-N-acetylase family protein; PFAM: GlcNAc-PI de-N-acetylase.
 
   
 0.788
ADR20915.1
InterPro IPR009474; KEGG: dfe:Dfer_5785 protein of unknown function DUF1094; PFAM: protein of unknown function DUF1094; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1094); Belongs to the UPF0403 family.
  
   
 0.787
ADR23285.1
COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: chu:CHU_0012 A-glycosyltransferase; PFAM: glycosyl transferase group 1; SPTR: Glycosyl transferase, group 1 family protein; PFAM: Glycosyl transferases group 1.
  
   
 0.781
ADR21661.1
Protein of unknown function DUF2480; InterPro IPR018914; KEGG: chu:CHU_0100 hypothetical protein; PFAM: Protein of unknown function DUF2480; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF2480).
  
     0.670
ADR20382.1
KEGG: dfe:Dfer_3622 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF2911).
  
     0.655
ADR22791.1
KEGG: sli:Slin_5833 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF2847).
  
  
 0.638
ADR20924.1
KEGG: rmr:Rmar_0373 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF2911).
  
     0.637
ADR20154.1
Hypothetical protein; InterPro IPR019775; KEGG: rbi:RB2501_13729 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF2911).
  
     0.632
Your Current Organism:
Marivirga tractuosa
NCBI taxonomy Id: 643867
Other names: Flexibacter tractuosus DSM 4126, Flexibacter tractuosus IFO 15989, M. tractuosa DSM 4126, Marivirga tractuosa DSM 4126, Marivirga tractuosa IFO 15989, Marivirga tractuosa str. DSM 4126, Marivirga tractuosa strain DSM 4126
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.