STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADR21974.1KEGG: edi:EDI_058410 hypothetical protein; SPTR: Putative uncharacterized protein. (180 aa)    
Predicted Functional Partners:
ADR21975.1
KEGG: fjo:Fjoh_3511 hypothetical protein; SPTR: Hypothetical lipoprotein.
       0.639
ADR21976.1
KEGG: cat:CA2559_13268 hypothetical protein; SPTR: Putative outer membrane protein, probably involved in nutrient binding.
       0.639
ADR21977.1
COGs: COG0076 Glutamate decarboxylase and related PLP-dependent protein; InterPro IPR021115: IPR002129: IPR010977; KEGG: gau:GAU_3087 aromatic amino acid decarboxylase; PFAM: Pyridoxal-dependent decarboxylase; SPTR: Tyrosine decarboxylase 1; PFAM: Pyridoxal-dependent decarboxylase conserved domain.
       0.519
Your Current Organism:
Marivirga tractuosa
NCBI taxonomy Id: 643867
Other names: Flexibacter tractuosus DSM 4126, Flexibacter tractuosus IFO 15989, M. tractuosa DSM 4126, Marivirga tractuosa DSM 4126, Marivirga tractuosa IFO 15989, Marivirga tractuosa str. DSM 4126, Marivirga tractuosa strain DSM 4126
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