STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADR22013.1C4-dicarboxylate anaerobic carrier; COGs: COG1288 membrane protein; InterPro IPR018385; KEGG: cpe:CPE0985 hypothetical protein; PFAM: C4-dicarboxylate anaerobic carrier-like; SPTR: Putative uncharacterized protein; PFAM: C4-dicarboxylate anaerobic carrier. (494 aa)    
Predicted Functional Partners:
ADR22012.1
KEGG: pat:Patl_1908 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.705
ADR23695.1
KEGG: fjo:Fjoh_1273 hypothetical protein; SPTR: Hypothetical lipoprotein.
  
     0.459
ADR22014.1
COGs: COG4898 conserved hypothetical protein; InterPro IPR014580; KEGG: cpi:Cpin_6024 hypothetical protein; PFAM: Uncharacterised conserved protein UCP033199; SPTR: Putative uncharacterized protein; PFAM: Uncharacterized protein conserved in bacteria (DUF2200).
       0.455
ADR23693.1
Hypothetical protein; InterPro IPR013026; KEGG: fjo:Fjoh_1276 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.433
ADR23694.1
InterPro IPR014284; KEGG: fjo:Fjoh_1275 ECF subfamily RNA polymerase sigma-24 factor; SPTR: ECF subfamily RNA polymerase sigma-24 subunit; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family.
  
     0.420
ADR23696.1
PKD domain containing protein; InterPro IPR000601; KEGG: fjo:Fjoh_1272 hypothetical protein; PFAM: PKD domain containing protein; SMART: PKD domain containing protein; SPTR: Putative uncharacterized protein; PFAM: PKD domain.
  
     0.414
Your Current Organism:
Marivirga tractuosa
NCBI taxonomy Id: 643867
Other names: Flexibacter tractuosus DSM 4126, Flexibacter tractuosus IFO 15989, M. tractuosa DSM 4126, Marivirga tractuosa DSM 4126, Marivirga tractuosa IFO 15989, Marivirga tractuosa str. DSM 4126, Marivirga tractuosa strain DSM 4126
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