STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADR22155.1Helix-turn-helix domain protein; InterPro IPR001387; KEGG: phe:Phep_1912 helix-turn-helix domain protein; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; SPTR: Transcriptional regulator; PFAM: Helix-turn-helix. (178 aa)    
Predicted Functional Partners:
ADR22154.1
KEGG: gau:GAU_0093 hypothetical protein; SPTR: Putative uncharacterized protein.
  
    0.780
ADR20034.1
KEGG: gfo:GFO_2639 membrane protein; SPTR: Putative uncharacterized protein.
  
     0.579
ADR22156.1
KEGG: emi:Emin_0166 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.540
ADR20036.1
KEGG: gfo:GFO_2641 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.468
ADR22157.1
COGs: COG0783 DNA-binding ferritin-like protein (oxidative damage protectant); InterPro IPR002177: IPR008331; KEGG: gfo:GFO_2047 Dps family ferritin-like DNA-binding protein; PFAM: Ferritin Dps family protein; SPTR: Dps family ferritin-like DNA-binding protein; PFAM: Ferritin-like domain; Belongs to the Dps family.
     
 0.453
ADR20346.1
Protease B; KEGG: gfo:GFO_0457 protease B; SPTR: Protease B; PFAM: Dual-action HEIGH metallo-peptidase.
  
    0.436
ADR20252.1
HipA domain protein; COGs: COG3550 conserved hypothetical protein; InterPro IPR012894: IPR012893; KEGG: plt:Plut_1315 hypothetical protein; PFAM: HipA domain protein; SPTR: Putative uncharacterized protein; PFAM: HipA-like C-terminal domain; HipA-like N-terminal domain.
  
 
 0.433
ADR20035.1
COGs: COG1842 Phage shock protein A (IM30) suppresses sigma54-dependent transcription; InterPro IPR007157; KEGG: gfo:GFO_2640 PspA/IM30 family protein; PFAM: PspA/IM30 family protein; SPTR: PspA/IM30 family protein; PFAM: PspA/IM30 family.
 
  
 0.430
ADR23491.1
Protein of unknown function, Porph ging; InterPro IPR019115; KEGG: zpr:ZPR_4165 hypothetical protein; PFAM: Protein of unknown function, Porph ging; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (Porph_ging); TIGRFAM: Porphyromonas gingivalis paralogous family TIGR01200.
  
     0.427
ADR21954.1
COGs: COG4185 conserved hypothetical protein; KEGG: bvu:BVU_1630 hypothetical protein; SPTR: Uncharacterized protein conserved in bacteria; PFAM: Zeta toxin.
   
 
 0.406
Your Current Organism:
Marivirga tractuosa
NCBI taxonomy Id: 643867
Other names: Flexibacter tractuosus DSM 4126, Flexibacter tractuosus IFO 15989, M. tractuosa DSM 4126, Marivirga tractuosa DSM 4126, Marivirga tractuosa IFO 15989, Marivirga tractuosa str. DSM 4126, Marivirga tractuosa strain DSM 4126
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