STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADR22160.1COGs: COG0515 Serine/threonine protein kinase; InterProIPR019734: IPR000719: IPR013026: IPR017442: IPR 001440: IPR020635: IPR002290: IPR017441: IPR008271; KEGG: pat:Patl_0961 TPR repeat-containing serine/threonin protein kinase; PFAM: Serine/threonine-protein kinase-like domain; Tetratricopeptide TPR_1 repeat-containing protein; SMART: serine/threonine protein kinase; Tyrosine-protein kinase, catalytic domain; Tetratricopeptide repeat; SPTR: Serine/threonine protein kinase; PFAM: Protein kinase domain. (833 aa)    
Predicted Functional Partners:
ADR22161.1
RNA polymerase sigma factor; InterPro IPR011517: IPR014284; KEGG: sus:Acid_1209 ECF subfamily RNA polymerase sigma-24 factor; SPTR: RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor; RNA polymerase sigma factor, sigma-70 family; PFAM: ECF sigma factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma factor, TIGR02999 family.
 
 
   0.944
ADR21492.1
KEGG: shi:Shel_11830 hypothetical protein; SPTR: Putative uncharacterized protein.
   
 
 0.549
ADR21296.1
Transcriptional regulator, AraC family; COGs: COG5616 integral membrane protein; InterProIPR018060: IPR019734: IPR013026: IPR001440: IPR 000005; KEGG: rlg:Rleg_3418 adenylate/guanylate cyclase with TPR repeats; PFAM: helix-turn-helix- domain containing protein AraC type; Tetratricopeptide TPR_1 repeat-containing protein; PRIAM: Adenylate cyclase; SMART: Helix-turn-helix, AraC domain; Tetratricopeptide repeat; SPTR: Serine/threonine protein kinase; PFAM: Tetratricopeptide repeat.
 
 0.403
Your Current Organism:
Marivirga tractuosa
NCBI taxonomy Id: 643867
Other names: Flexibacter tractuosus DSM 4126, Flexibacter tractuosus IFO 15989, M. tractuosa DSM 4126, Marivirga tractuosa DSM 4126, Marivirga tractuosa IFO 15989, Marivirga tractuosa str. DSM 4126, Marivirga tractuosa strain DSM 4126
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