STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADR22367.1COGs: COG0778 Nitroreductase; InterPro IPR000415; KEGG: cpi:Cpin_1600 nitroreductase; PFAM: nitroreductase; SPTR: Protein YdjA; PFAM: Nitroreductase family. (196 aa)    
Predicted Functional Partners:
ADR22366.1
KEGG: nmc:NMC0895 ParA protein; SPTR: Plasmid partition protein ParF, putative; PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain.
       0.549
ADR22365.1
KEGG: edi:EDI_339150 hypothetical protein; SPTR: ABC superfamily ATP binding cassette transporter, ABC protein.
       0.546
ribBA
GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
  
 
 0.460
ADR20907.1
COGs: COG0318 Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II; InterPro IPR020845: IPR000873; KEGG: dfe:Dfer_3249 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase and ligase; SPTR: Long-chain-fatty-acid--CoA ligase; PFAM: AMP-binding enzyme.
 
 
 
 0.441
Your Current Organism:
Marivirga tractuosa
NCBI taxonomy Id: 643867
Other names: Flexibacter tractuosus DSM 4126, Flexibacter tractuosus IFO 15989, M. tractuosa DSM 4126, Marivirga tractuosa DSM 4126, Marivirga tractuosa IFO 15989, Marivirga tractuosa str. DSM 4126, Marivirga tractuosa strain DSM 4126
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