STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADR22378.1KEGG: tet:TTHERM_00035470 hypothetical protein; SPTR: Putative uncharacterized protein. (271 aa)    
Predicted Functional Partners:
ADR22379.1
Hypothetical protein; KEGG: bth:BT_3749 putative anti-sigma factor; SPTR: Anti-sigma factor; PFAM: FecR protein.
       0.773
ADR22380.1
RNA polymerase, sigma-24 subunit, ECF subfamily; COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR014284: IPR007627: IPR013249; KEGG: zpr:ZPR_0699 ECF subfamily RNA polymerase sigma-24 factor; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; SPTR: ECF subfamily RNA polymerase sigma-24 factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family.
       0.636
ADR22381.1
KEGG: cts:Ctha_2510 conserved hypothetical protein; putative signal peptide; SPTR: Cytochrome c family protein, putative; PFAM: Protein of unknown function (DUF3365).
       0.484
ADR22382.1
Histidine kinase HAMP region domain protein; InterPro IPR003660: IPR003018; KEGG: lbl:LBL_1299 sensor histidine kinase and response regulator of a two component complex; PFAM: histidine kinase HAMP region domain protein; GAF domain protein; SMART: GAF domain protein; SPTR: GAF Sensor Hybrid Histidine Kinase, putative; PFAM: HAMP domain; GAF domain.
       0.484
Your Current Organism:
Marivirga tractuosa
NCBI taxonomy Id: 643867
Other names: Flexibacter tractuosus DSM 4126, Flexibacter tractuosus IFO 15989, M. tractuosa DSM 4126, Marivirga tractuosa DSM 4126, Marivirga tractuosa IFO 15989, Marivirga tractuosa str. DSM 4126, Marivirga tractuosa strain DSM 4126
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