STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADR22385.1KEGG: chu:CHU_3705 hypothetical protein; SPTR: Putative uncharacterized protein. (467 aa)    
Predicted Functional Partners:
prfA
Bacterial peptide chain release factor 1 (bRF-1); Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA.
       0.786
ADR20490.1
KEGG: chu:CHU_1606 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: TonB-dependent Receptor Plug Domain.
  
     0.775
ADR23410.1
EppA_BapA family protein; InterPro IPR009894; KEGG: chu:CHU_1567 hypothetical protein; PFAM: EppA_BapA family protein; SPTR: Putative uncharacterized protein.
  
     0.712
ADR23447.1
KEGG: chu:CHU_2196 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.667
ADR23558.1
KEGG: chu:CHU_2695 hypothetical protein; SPTR: Membrane protein, putative.
  
     0.666
ADR22392.1
KEGG: chu:CHU_0064 hypothetical protein; SPTR: Membrane protein, putative.
  
     0.645
ADR22951.1
KEGG: chu:CHU_2709 PorT-related protein; SPTR: PorT-related protein.
  
     0.641
ADR22656.1
Polysaccharide export protein; COGs: COG1596 Periplasmic protein involved in polysaccharide export; InterPro IPR003715; KEGG: chu:CHU_3844 polysaccharide export periplasmic protein; PFAM: polysaccharide export protein; SPTR: Periplasmic protein involved in polysaccharide export; manually curated; PFAM: Polysaccharide biosynthesis/export protein.
  
     0.632
ADR22530.1
Hypothetical protein; KEGG: chu:CHU_0166 outer membrane protein; SPTR: Outer membrane protein, OMP85 family, putative.
  
     0.602
ADR21845.1
COGs: COG0760 Parvulin-like peptidyl-prolyl isomerase; InterPro IPR000297; KEGG: chu:CHU_0192 peptidyl-prolyl cis-trans isomerase; PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; SPTR: Putative exported isomerase; PFAM: PPIC-type PPIASE domain.
  
     0.592
Your Current Organism:
Marivirga tractuosa
NCBI taxonomy Id: 643867
Other names: Flexibacter tractuosus DSM 4126, Flexibacter tractuosus IFO 15989, M. tractuosa DSM 4126, Marivirga tractuosa DSM 4126, Marivirga tractuosa IFO 15989, Marivirga tractuosa str. DSM 4126, Marivirga tractuosa strain DSM 4126
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