STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xerC-2Integrase family protein; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. (293 aa)    
Predicted Functional Partners:
ADR22390.1
Sigma 54 modulation protein/ribosomal protein S30EA; COGs: COG1544 Ribosome-associated protein Y (PSrp-1); InterPro IPR003489; KEGG: chu:CHU_3399 ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; SPTR: Sigma-54 modulation protein; TIGRFAM: ribosomal subunit interface protein; PFAM: Sigma 54 modulation protein / S30EA ribosomal protein; TIGRFAM: ribosomal subunit interface protein.
  
    0.760
ADR22647.1
Cell division protein FtsK/SpoIIIE; COGs: COG1674 DNA segregation ATPase FtsK/SpoIIIE and related protein; InterPro IPR002543: IPR018541; KEGG: chu:CHU_2700 cell division protein; PFAM: cell divisionFtsK/SpoIIIE; DNA translocase ftsK gamma; SPTR: Putative FtsK/SpoIIIE-like protein; PFAM: Ftsk gamma domain; FtsK/SpoIIIE family.
 
   
 0.621
rpsU
SSU ribosomal protein S21P; InterPro IPR001911: IPR018278; KEGG: sli:Slin_0097 ribosomal protein S21; PFAM: ribosomal protein S21; SPTR: 30S ribosomal protein S21; TIGRFAM: ribosomal protein S21; PFAM: Ribosomal protein S21; TIGRFAM: ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family.
       0.601
recR
Recombination protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO.
  
   
 0.469
ADR22363.1
COGs: COG1040 amidophosphoribosyltransferase; InterPro IPR000836; KEGG: aas:Aasi_1314 hypothetical protein; PFAM: phosphoribosyltransferase; SPTR: Competence protein; manually curated; PFAM: Phosphoribosyl transferase domain; TIGRFAM: comF family protein.
   
    0.440
apt
Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.
  
    0.425
ADR22391.1
KEGG: dfe:Dfer_3742 hypothetical protein; SPTR: Tetratricopeptide repeat domain protein.
       0.418
ADR22392.1
KEGG: chu:CHU_0064 hypothetical protein; SPTR: Membrane protein, putative.
       0.413
mfd
Transcription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily.
  
   
 0.407
Your Current Organism:
Marivirga tractuosa
NCBI taxonomy Id: 643867
Other names: Flexibacter tractuosus DSM 4126, Flexibacter tractuosus IFO 15989, M. tractuosa DSM 4126, Marivirga tractuosa DSM 4126, Marivirga tractuosa IFO 15989, Marivirga tractuosa str. DSM 4126, Marivirga tractuosa strain DSM 4126
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