STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADR22554.1KEGG: sli:Slin_1689 DNA uptake protein and related DNA-binding protein-like protein; SPTR: Putative uncharacterized protein. (315 aa)    
Predicted Functional Partners:
ADR21159.1
KEGG: sli:Slin_5160 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.644
ADR21357.1
COGs: COG0658 membrane metal-binding protein; InterPro IPR004477; KEGG: aas:Aasi_0450 hypothetical protein; PFAM: ComEC/Rec2-related protein; SPTR: Competence protein, putative; TIGRFAM: ComEC/Rec2-related protein; PFAM: Competence protein; TIGRFAM: ComEC/Rec2-related protein.
 
  
 0.618
ADR23066.1
KEGG: dfe:Dfer_0200 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: S1/P1 Nuclease.
  
     0.596
ADR22553.1
COGs: COG1112 Superfamily I DNA and RNA helicase and helicase subunits; KEGG: dfe:Dfer_4582 superfamily I DNA helicase; SPTR: Superfamily I DNA helicase.
       0.593
ADR22552.1
KEGG: lbf:LBF_2597 methyltransferase/methylase; SPTR: Putative methyltransferase; manually curated.
       0.583
ADR22555.1
COGs: COG1514 2'-5' RNA ligase; KEGG: cyt:cce_3434 putative 2',5' RNA ligase; SPTR: Putative 2',5' RNA ligase; PFAM: Cyclic phosphodiesterase-like protein.
       0.563
ADR21049.1
3'-5' exonuclease, PolB; InterPro IPR019288; KEGG: rbi:RB2501_05965 hypothetical protein; PFAM: 3'-5' exonuclease, PolB-like; SPTR: Putative uncharacterized protein; PFAM: Predicted 3'-5' exonuclease related to the exonuclease domain of PolB.
  
     0.499
ADR23557.1
KEGG: sli:Slin_0436 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF2851).
 
     0.487
ADR20969.1
KEGG: aas:Aasi_1197 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: OstA-like protein.
  
     0.450
ADR23269.1
KEGG: sli:Slin_4754 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.438
Your Current Organism:
Marivirga tractuosa
NCBI taxonomy Id: 643867
Other names: Flexibacter tractuosus DSM 4126, Flexibacter tractuosus IFO 15989, M. tractuosa DSM 4126, Marivirga tractuosa DSM 4126, Marivirga tractuosa IFO 15989, Marivirga tractuosa str. DSM 4126, Marivirga tractuosa strain DSM 4126
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