STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADR22572.1Ribonuclease, Rne/Rng family; COGs: COG1530 Ribonuclease G and E; InterPro IPR004659: IPR003029: IPR019307; KEGG: dfe:Dfer_4433 ribonuclease, Rne/Rng family; PFAM: RNA-binding protein AU-1/Ribonuclease E/G; RNA binding S1 domain protein; SPTR: Putative ribonuclease E; TIGRFAM: ribonuclease, Rne/Rng family; PFAM: Ribonuclease E/G family; S1 RNA binding domain; TIGRFAM: ribonuclease, Rne/Rng family. (517 aa)    
Predicted Functional Partners:
pnp
Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.
  
 
 0.849
eno
Enolase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family.
    
 
 0.716
ADR21175.1
COGs: COG0668 Small-conductance mechanosensitive channel; InterPro IPR006685; KEGG: pam:PANA_1805 YjeP; PFAM: MscS Mechanosensitive ion channel; SPTR: YjeP; PFAM: Mechanosensitive ion channel.
 
      0.629
ADR22570.1
COGs: COG0776 Bacterial nucleoid DNA-binding protein; InterPro IPR000119; KEGG: chu:CHU_3687 DNA-binding protein HU; PFAM: histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein; SPTR: DNA-binding protein HU; PFAM: Bacterial DNA-binding protein; Belongs to the bacterial histone-like protein family.
  
  
 0.580
ADR22571.1
Tetratricopeptide domain protein; InterPro IPR019734: IPR013026; KEGG: dfe:Dfer_4434 tetratricopeptide domain protein; SPTR: Putative uncharacterized protein; PFAM: Tetratricopeptide repeat.
  
    0.514
rho
Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template.
 
  
 0.509
ADR21359.1
PhoH family protein; COGs: COG1702 Phosphate starvation-inducible protein PhoH predicted ATPase; InterPro IPR003714; KEGG: sli:Slin_1917 PhoH family protein; PFAM: PhoH family protein; SPTR: Phosphate starvation-inducible protein, PhoH; PFAM: PhoH-like protein.
 
    0.504
dapF
Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan.
  
   
 0.475
ADR22573.1
Histidine kinase; COGs: COG0642 Signal transduction histidine kinase; InterProIPR003594: IPR005467: IPR011123: IPR009386: IPR 004358; KEGG: chu:CHU_3029 PAS/PAC sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; Two component regulator three Y domain-containing protein; protein of unknown function DUF1043; SMART: ATP-binding region ATPase domain protein; SPTR: Two-component hybrid sensor and regulator, putative; PFAM: Y_Y_Y domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
       0.469
ADR23376.1
Polynucleotide adenylyltransferase/metal dependent phosphohydrolase; COGs: COG0617 tRNA nucleotidyltransferase/poly(A) polymerase; InterPro IPR006675: IPR003607: IPR002646: IPR006674; KEGG: dfe:Dfer_2415 polynucleotide adenylyltransferase/metal dependent phosphohydrolase; PFAM: Polynucleotide adenylyltransferase region; metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; SPTR: TRNA nucleotidyltransferase; TIGRFAM: metal dependent phophohydrolase; PFAM: HD domain; Poly A polymerase head domain; TIGRFAM: uncharacterized domain HDIG; Belongs [...]
 
 
 
 0.465
Your Current Organism:
Marivirga tractuosa
NCBI taxonomy Id: 643867
Other names: Flexibacter tractuosus DSM 4126, Flexibacter tractuosus IFO 15989, M. tractuosa DSM 4126, Marivirga tractuosa DSM 4126, Marivirga tractuosa IFO 15989, Marivirga tractuosa str. DSM 4126, Marivirga tractuosa strain DSM 4126
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