STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADR22577.1Cryptochrome, DASH family; COGs: COG0415 Deoxyribodipyrimidine photolyase; InterPro IPR014133: IPR006050: IPR005101: IPR002081; KEGG: amr:AM1_2428 deoxyribodipyrimidine photolyase; PFAM: DNA photolyase FAD-binding; DNA photolyase domain protein; SPTR: Cryptochrome, DASH family; TIGRFAM: cryptochrome, DASH family; PFAM: FAD binding domain of DNA photolyase; DNA photolyase; TIGRFAM: cryptochrome, DASH family. (475 aa)    
Predicted Functional Partners:
ADR20099.1
COGs: COG0394 Protein-tyrosine-phosphatase; InterPro IPR000106: IPR017867; KEGG: lil:LB035 low molecular weight phosphotyrosine protein phosphatase; PFAM: Protein-tyrosine phosphatase, low molecular weight; SMART: Protein-tyrosine phosphatase, low molecular weight; SPTR: Phosphotyrosine protein phosphatase; PFAM: Low molecular weight phosphotyrosine protein phosphatase.
 
  
   0.664
ADR22576.1
PAS sensor protein; InterPro IPR003018: IPR000014: IPR003660; KEGG: dae:Dtox_3786 GAF sensor hybrid histidine kinase; PFAM: GAF domain protein; histidine kinase HAMP region domain protein; SMART: GAF domain protein; SPTR: Chemotaxis protein; TIGRFAM: PAS sensor protein; PFAM: GAF domain.
  
    0.556
ADR23103.1
COGs: COG3046 Uncharacterized protein related to deoxyribodipyrimidine photolyase; InterPro IPR007357; KEGG: chu:CHU_1054 hypothetical protein; PFAM: deoxyribodipyrimidine photolyase-related protein; SPTR: Putative uncharacterized protein; PFAM: Deoxyribodipyrimidine photo-lyase-related protein.
   
 0.529
tpiA
Triosephosphate isomerase; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family.
     
 0.501
prmA
Ribosomal L11 methyltransferase; Methylates ribosomal protein L11; Belongs to the methyltransferase superfamily. PrmA family.
       0.450
ADR22580.1
KEGG: chu:CHU_3275 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.450
ADR21961.1
COGs: COG1233 Phytoene dehydrogenase and related protein; InterPro IPR014105: IPR002937; KEGG: hau:Haur_0609 zeta-phytoene desaturase; PFAM: amine oxidase; SPTR: Gamma-carotene desaturase; TIGRFAM: phytoene desaturase; PFAM: Flavin containing amine oxidoreductase; TIGRFAM: phytoene desaturase.
 
  
 0.433
hemH
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family.
     
 0.426
ADR21462.1
COGs: COG1233 Phytoene dehydrogenase and related protein; InterPro IPR002937: IPR014105; KEGG: sli:Slin_5960 phytoene desaturase; PFAM: amine oxidase; SPTR: Phytoene desaturase; TIGRFAM: phytoene desaturase; PFAM: Flavin containing amine oxidoreductase; TIGRFAM: phytoene desaturase.
 
  
 0.425
ADR20377.1
Protein of unknown function DUF227; InterPro IPR004119: IPR015897; KEGG: dre:797003 hypothetical LOC797003; PFAM: protein of unknown function DUF227; SMART: CHK kinase-like; SPTR: Putative uncharacterized protein; PFAM: Domain of unknown function (DUF227).
  
     0.402
Your Current Organism:
Marivirga tractuosa
NCBI taxonomy Id: 643867
Other names: Flexibacter tractuosus DSM 4126, Flexibacter tractuosus IFO 15989, M. tractuosa DSM 4126, Marivirga tractuosa DSM 4126, Marivirga tractuosa IFO 15989, Marivirga tractuosa str. DSM 4126, Marivirga tractuosa strain DSM 4126
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