STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADR22944.1KEGG: dfe:Dfer_4063 hypothetical protein; SPTR: Putative uncharacterized protein. (486 aa)    
Predicted Functional Partners:
ADR22461.1
COGs: COG1138 Cytochrome c biogenesis factor; InterPro IPR002541: IPR003567; KEGG: dfe:Dfer_5080 cytochrome c assembly protein; PFAM: cytochrome c assembly protein; SPTR: Cytochrome c biogenesis factor; PFAM: Cytochrome C assembly protein; TIGRFAM: c-type cytochrome biogenesis protein CcmF.
 
 
 0.834
aroC
Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system.
      0.805
ADR21199.1
InterPro IPR002035; KEGG: dfe:Dfer_5483 von Willebrand factor type A; PFAM: von Willebrand factor type A; SMART: von Willebrand factor type A; SPTR: Von Willebrand factor, type A, putative; PFAM: von Willebrand factor type A domain.
 
     0.769
ADR20408.1
KEGG: dfe:Dfer_3845 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.763
ADR23425.1
Hypothetical protein; InterPro IPR011652; KEGG: dfe:Dfer_3784 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.760
ADR22391.1
KEGG: dfe:Dfer_3742 hypothetical protein; SPTR: Tetratricopeptide repeat domain protein.
  
     0.755
ADR20407.1
InterPro IPR002035; KEGG: dfe:Dfer_3846 von Willebrand factor type A; PFAM: von Willebrand factor type A; SMART: von Willebrand factor type A; SPTR: Von Willebrand factor type A domain protein; PFAM: von Willebrand factor type A domain.
 
     0.741
ADR22583.1
KEGG: dfe:Dfer_4875 hypothetical protein; SPTR: Membrane protein, putative.
  
     0.738
ADR22943.1
KEGG: sli:Slin_5074 hypothetical protein; SPTR: Putative uncharacterized protein.
 
     0.738
ADR20800.1
KEGG: dfe:Dfer_2677 hypothetical protein; SPTR: Putative uncharacterized protein; manually curated.
  
     0.730
Your Current Organism:
Marivirga tractuosa
NCBI taxonomy Id: 643867
Other names: Flexibacter tractuosus DSM 4126, Flexibacter tractuosus IFO 15989, M. tractuosa DSM 4126, Marivirga tractuosa DSM 4126, Marivirga tractuosa IFO 15989, Marivirga tractuosa str. DSM 4126, Marivirga tractuosa strain DSM 4126
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