STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADR23065.1HtrA2 peptidase; COGs: COG0265 Trypsin-like serine protease typically periplasmic contain C-terminal PDZ domain; InterPro IPR001254: IPR001478: IPR001940; KEGG: chu:CHU_3006 periplasmic serine protease; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; PRIAM: HtrA2 peptidase; SMART: PDZ/DHR/GLGF domain protein; SPTR: Periplasmic serine protease; PFAM: Trypsin; PDZ domain (Also known as DHR or GLGF); TIGRFAM: periplasmic serine protease, Do/DeqQ family. (480 aa)    
Predicted Functional Partners:
ADR22669.1
AAA ATPase; KEGG: cpi:Cpin_1073 AAA ATPase; SPTR: AAA ATPase; PFAM: ATPase family associated with various cellular activities (AAA).
   
 0.800
glpK
Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family.
   
 0.633
rsfS
Iojap-like protein; Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation.
 
   0.579
ADR22903.1
OmpA/MotB domain protein; COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterProIPR019734: IPR013026: IPR006665: IPR011659: IPR 006664: IPR018521; KEGG: chu:CHU_2715 peptidoglycan-associated lipoprotein; PFAM: OmpA/MotB domain protein; WD40-like beta Propeller containing protein; SMART: Tetratricopeptide repeat; SPTR: Peptidoglycan-associated lipoprotein; PFAM: WD40-like Beta Propeller Repeat; OmpA family.
  
 0.553
rplI
LSU ribosomal protein L9P; Binds to the 23S rRNA.
 
 
 
 0.511
ADR23079.1
Histidine kinase; COGs: COG0642 Signal transduction histidine kinase; InterProIPR001440: IPR003661: IPR003594: IPR004358: IPR 019734: IPR005467: IPR013026; KEGG: rbi:RB2501_13794 putative two component system histidine kinase/response regulator fusion protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; Tetratricopeptide TPR_1 repeat-containing protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; Tetratricopeptide repeat; SPTR: Sensor histidine kinase/response regulator; PFAM: Histidine kinase-, DNA gyrase B [...]
 
 0.503
pnp
Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.
  
  
 0.477
ADR22848.1
Site-2 protease; COGs: COG0750 membrane-associated Zn-dependent protease 1; InterPro IPR001478: IPR008915: IPR004387; KEGG: dfe:Dfer_4131 membrane-associated zinc metalloprotease; PFAM: peptidase M50; SPTR: Membrane-associated zinc metalloprotease; TIGRFAM: membrane-associated zinc metalloprotease; PFAM: Peptidase family M50; PDZ domain (Also known as DHR or GLGF); TIGRFAM: RIP metalloprotease RseP.
 
  
 0.474
ADR23064.1
TonB-dependent receptor plug; InterPro IPR012910: IPR000531; KEGG: dfe:Dfer_2699 TonB-dependent receptor; PFAM: TonB-dependent receptor plug; TonB-dependent receptor; SPTR: Putative uncharacterized protein.
       0.465
ADR22456.1
COGs: COG2030 Acyl dehydratase; InterPro IPR002539; KEGG: cpi:Cpin_1362 MaoC domain protein dehydratase; PFAM: MaoC domain protein dehydratase; PRIAM: Enoyl-CoA hydratase; SPTR: Possible enoyl-CoA hydratase; PFAM: MaoC like domain.
    
  0.435
Your Current Organism:
Marivirga tractuosa
NCBI taxonomy Id: 643867
Other names: Flexibacter tractuosus DSM 4126, Flexibacter tractuosus IFO 15989, M. tractuosa DSM 4126, Marivirga tractuosa DSM 4126, Marivirga tractuosa IFO 15989, Marivirga tractuosa str. DSM 4126, Marivirga tractuosa strain DSM 4126
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