rpsT protein (Marivirga tractuosa) - STRING interaction network

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rpsT

SSU ribosomal protein S20P; Binds directly to 16S ribosomal RNA. (84 aa)

Predicted Functional Partners:

rpmB

0.971

rplU

0.970

rpmF

0.969

rplM

0.969

rpsO

0.966

rpsP

0.965

rpsU

0.965

rpmE2

0.965

rpmH

0.964

rpmA

0.964

Your Current Organism:

Marivirga tractuosa

NCBI taxonomy Id: 643867
Other names: Flexibacter tractuosus DSM 4126, Flexibacter tractuosus IFO 15989, M. tractuosa DSM 4126, Marivirga tractuosa DSM 4126, Marivirga tractuosa IFO 15989, Marivirga tractuosa str. DSM 4126, Marivirga tractuosa strain DSM 4126

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
rplM	rplU	Ftrac_3368	Ftrac_1817	LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.977
rplM	rpmA	Ftrac_3368	Ftrac_1818	LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	COGs: COG0211 Ribosomal protein L27; InterPro IPR001684: IPR018261; KEGG: chu:CHU_0454 50S ribosomal protein L27; PFAM: ribosomal protein L27; SPTR: 50S ribosomal protein L27; TIGRFAM: ribosomal protein L27; PFAM: Ribosomal L27 protein; TIGRFAM: ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.	0.980
rplM	rpmB	Ftrac_3368	Ftrac_2018	LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	COGs: COG0227 Ribosomal protein L28; InterPro IPR001383; KEGG: fjo:Fjoh_4983 50S ribosomal protein L28; PFAM: ribosomal protein L28; SPTR: 50S ribosomal protein L28; TIGRFAM: ribosomal protein L28; PFAM: Ribosomal L28 family; TIGRFAM: ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.	0.969
rplM	rpmE2	Ftrac_3368	Ftrac_2619	LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	COGs: COG0254 Ribosomal protein L31; InterPro IPR002150; KEGG: aas:Aasi_0758 hypothetical protein; PFAM: ribosomal protein L31; SPTR: 50S ribosomal protein L31 type B; TIGRFAM: ribosomal protein L31; PFAM: Ribosomal protein L31; TIGRFAM: ribosomal protein L31.	0.965
rplM	rpmF	Ftrac_3368	Ftrac_3198	LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	LSU ribosomal protein L32P; InterPro IPR002677; KEGG: fps:FP2380 50S ribosomal protein L32; PFAM: ribosomal L32p protein; SPTR: 50S ribosomal protein L32; TIGRFAM: ribosomal protein L32; PFAM: Ribosomal L32p protein family; TIGRFAM: ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.	0.967
rplM	rpmH	Ftrac_3368	Ftrac_1678	LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	LSU ribosomal protein L34P; InterPro IPR000271: IPR020939; KEGG: sli:Slin_3921 ribosomal protein L34; PFAM: ribosomal protein L34; SPTR: 50S ribosomal protein L34; TIGRFAM: ribosomal protein L34; PFAM: Ribosomal protein L34; TIGRFAM: ribosomal protein L34, bacterial type; Belongs to the bacterial ribosomal protein bL34 family.	0.957
rplM	rpsO	Ftrac_3368	Ftrac_0214	LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	SSU ribosomal protein S15P; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.982
rplM	rpsP	Ftrac_3368	Ftrac_1729	LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	COGs: COG0228 Ribosomal protein S16; InterPro IPR000307: IPR020592; KEGG: dfe:Dfer_2582 30S ribosomal protein S16; PFAM: ribosomal protein S16; SPTR: 30S ribosomal protein S16; TIGRFAM: ribosomal protein S16; PFAM: Ribosomal protein S16; TIGRFAM: ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.	0.972
rplM	rpsT	Ftrac_3368	Ftrac_3092	LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	SSU ribosomal protein S20P; Binds directly to 16S ribosomal RNA.	0.969
rplM	rpsU	Ftrac_3368	Ftrac_2410	LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	SSU ribosomal protein S21P; InterPro IPR001911: IPR018278; KEGG: sli:Slin_0097 ribosomal protein S21; PFAM: ribosomal protein S21; SPTR: 30S ribosomal protein S21; TIGRFAM: ribosomal protein S21; PFAM: Ribosomal protein S21; TIGRFAM: ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family.	0.963
rplU	rplM	Ftrac_1817	Ftrac_3368	LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.977
rplU	rpmA	Ftrac_1817	Ftrac_1818	LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	COGs: COG0211 Ribosomal protein L27; InterPro IPR001684: IPR018261; KEGG: chu:CHU_0454 50S ribosomal protein L27; PFAM: ribosomal protein L27; SPTR: 50S ribosomal protein L27; TIGRFAM: ribosomal protein L27; PFAM: Ribosomal L27 protein; TIGRFAM: ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.	0.996
rplU	rpmB	Ftrac_1817	Ftrac_2018	LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	COGs: COG0227 Ribosomal protein L28; InterPro IPR001383; KEGG: fjo:Fjoh_4983 50S ribosomal protein L28; PFAM: ribosomal protein L28; SPTR: 50S ribosomal protein L28; TIGRFAM: ribosomal protein L28; PFAM: Ribosomal L28 family; TIGRFAM: ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.	0.971
rplU	rpmE2	Ftrac_1817	Ftrac_2619	LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	COGs: COG0254 Ribosomal protein L31; InterPro IPR002150; KEGG: aas:Aasi_0758 hypothetical protein; PFAM: ribosomal protein L31; SPTR: 50S ribosomal protein L31 type B; TIGRFAM: ribosomal protein L31; PFAM: Ribosomal protein L31; TIGRFAM: ribosomal protein L31.	0.966
rplU	rpmF	Ftrac_1817	Ftrac_3198	LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	LSU ribosomal protein L32P; InterPro IPR002677; KEGG: fps:FP2380 50S ribosomal protein L32; PFAM: ribosomal L32p protein; SPTR: 50S ribosomal protein L32; TIGRFAM: ribosomal protein L32; PFAM: Ribosomal L32p protein family; TIGRFAM: ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.	0.970
rplU	rpmH	Ftrac_1817	Ftrac_1678	LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	LSU ribosomal protein L34P; InterPro IPR000271: IPR020939; KEGG: sli:Slin_3921 ribosomal protein L34; PFAM: ribosomal protein L34; SPTR: 50S ribosomal protein L34; TIGRFAM: ribosomal protein L34; PFAM: Ribosomal protein L34; TIGRFAM: ribosomal protein L34, bacterial type; Belongs to the bacterial ribosomal protein bL34 family.	0.962
rplU	rpsO	Ftrac_1817	Ftrac_0214	LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	SSU ribosomal protein S15P; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.969
rplU	rpsP	Ftrac_1817	Ftrac_1729	LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	COGs: COG0228 Ribosomal protein S16; InterPro IPR000307: IPR020592; KEGG: dfe:Dfer_2582 30S ribosomal protein S16; PFAM: ribosomal protein S16; SPTR: 30S ribosomal protein S16; TIGRFAM: ribosomal protein S16; PFAM: Ribosomal protein S16; TIGRFAM: ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.	0.971
rplU	rpsT	Ftrac_1817	Ftrac_3092	LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	SSU ribosomal protein S20P; Binds directly to 16S ribosomal RNA.	0.970
rplU	rpsU	Ftrac_1817	Ftrac_2410	LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	SSU ribosomal protein S21P; InterPro IPR001911: IPR018278; KEGG: sli:Slin_0097 ribosomal protein S21; PFAM: ribosomal protein S21; SPTR: 30S ribosomal protein S21; TIGRFAM: ribosomal protein S21; PFAM: Ribosomal protein S21; TIGRFAM: ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family.	0.966

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