STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADR23074.1KEGG: bth:BT_1569 hypothetical protein; SPTR: Putative uncharacterized protein. (191 aa)    
Predicted Functional Partners:
ADR23075.1
Transcriptional regulator; KEGG: pdi:BDI_1980 hypothetical protein; SPTR: MarR/emrR family transcriptional regulator.
  
    0.789
ADR23073.1
KEGG: dfe:Dfer_1163 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.741
ADR23076.1
Tetratricopeptide TPR_1 repeat-containing protein; InterPro IPR001440: IPR019734: IPR013026; KEGG: srm:SRM_00929 conserved hypohtetical protein, membrane, containing tetratricopeptide repeat domain; PFAM: Tetratricopeptide TPR_1 repeat-containing protein; SMART: Tetratricopeptide repeat; SPTR: Conserved hypohtetical protein, membrane, containing tetratricopeptide repeat domain; PFAM: Tetratricopeptide repeat.
       0.584
ADR23077.1
TonB-dependent receptor plug; InterPro IPR012910; KEGG: sli:Slin_3591 TonB-dependent receptor plug; PFAM: TonB-dependent receptor plug; SPTR: Putative outer membrane protein, probably involved in nutrient binding; PFAM: TonB-dependent Receptor Plug Domain.
       0.483
Your Current Organism:
Marivirga tractuosa
NCBI taxonomy Id: 643867
Other names: Flexibacter tractuosus DSM 4126, Flexibacter tractuosus IFO 15989, M. tractuosa DSM 4126, Marivirga tractuosa DSM 4126, Marivirga tractuosa IFO 15989, Marivirga tractuosa str. DSM 4126, Marivirga tractuosa strain DSM 4126
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