STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADR23189.1Protein of unknown function DUF107; COGs: COG1030 Membrane-bound serine protease (ClpP class); InterPro IPR002142: IPR002810; KEGG: chu:CHU_2844 serine protease, ClpP class; PFAM: protein of unknown function DUF107; peptidase S49; SPTR: Putative uncharacterized protein; PFAM: Peptidase family S49; NfeD-like. (461 aa)    
Predicted Functional Partners:
ADR20522.1
COGs: COG4864 conserved hypothetical protein; KEGG: aas:Aasi_1337 hypothetical protein; SPTR: UPF0365 protein Aasi_1337; PFAM: SigmaW regulon antibacterial.
 
    0.895
ADR23678.1
COGs: COG4864 conserved hypothetical protein; KEGG: chu:CHU_3230 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: SigmaW regulon antibacterial.
 
    0.895
kdsB
3-deoxy-D-manno- octulosonatecytidylyltransferase; Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria.
       0.786
ADR23187.1
COGs: COG0778 Nitroreductase; InterPro IPR000415; KEGG: gfo:GFO_0968 nitroreductase family protein; PFAM: nitroreductase; SPTR: Nitroreductase family protein; PFAM: Nitroreductase family.
       0.773
ADR23679.1
Protein of unknown function DUF107; COGs: COG1030 Membrane-bound serine protease (ClpP class); InterPro IPR002810; KEGG: chu:CHU_3229 hypothetical protein; PFAM: protein of unknown function DUF107; SPTR: Putative uncharacterized protein; PFAM: NfeD-like.
  
     0.753
ADR23190.1
Peptidoglycan-binding lysin domain; InterPro IPR018392: IPR002482; KEGG: chu:CHU_2842 LysM repeat-containing protein; PFAM: Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding LysM; SPTR: Possible LysM domain; PFAM: LysM domain.
 
     0.442
Your Current Organism:
Marivirga tractuosa
NCBI taxonomy Id: 643867
Other names: Flexibacter tractuosus DSM 4126, Flexibacter tractuosus IFO 15989, M. tractuosa DSM 4126, Marivirga tractuosa DSM 4126, Marivirga tractuosa IFO 15989, Marivirga tractuosa str. DSM 4126, Marivirga tractuosa strain DSM 4126
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