STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADR23192.1Exonuclease VII, large subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseA family. (415 aa)    
Predicted Functional Partners:
ADR20929.1
Exonuclease VII small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family.
  
 0.992
ADR23194.1
COGs: COG0589 Universal stress protein UspA and related nucleotide-binding protein; InterPro IPR006016: IPR006015; KEGG: gfo:GFO_2553 universal stress protein family protein; PFAM: UspA domain-containing protein; SPTR: UspA; PFAM: Universal stress protein family.
 
   
 0.868
ADR23193.1
Hypothetical protein.
       0.773
folD
5,10-methylenetetrahydrofolate dehydrogenase (NADP+); Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10- methenyltetrahydrofolate to 10-formyltetrahydrofolate.
  
    0.569
ADR23195.1
Protein of unknown function DUF202; InterPro IPR003807; KEGG: zpr:ZPR_3646 hypothetical protein; PFAM: protein of unknown function DUF202; SPTR: Putative uncharacterized protein; PFAM: Domain of unknown function DUF.
       0.568
ADR20885.1
Outer membrane lipoprotein P61; InterPro IPR019734: IPR013026; KEGG: chu:CHU_2679 outer membrane lipoprotein P61; SPTR: Probable outer membrane lipoprotein P61.
 
    0.531
ADR20031.1
3'-5' exonuclease; COGs: COG0349 Ribonuclease D; InterPro IPR002562; KEGG: dsa:Desal_0122 3'-5' exonuclease; PFAM: 3'-5' exonuclease; SMART: 3'-5' exonuclease; SPTR: Putative uncharacterized protein; PFAM: 3'-5' exonuclease.
 
     0.514
ADR22191.1
NusG antitermination factor; COGs: COG0250 Transcription antiterminator; InterPro IPR006645; KEGG: cpi:Cpin_2360 NusG antitermination factor; PFAM: NGN domain-containing protein; SMART: NGN domain-containing protein; SPTR: NusG antitermination factor; PFAM: Transcription termination factor nusG.
   
  
 0.489
nusG
Transcription antitermination protein nusG; Participates in transcription elongation, termination and antitermination.
   
  
 0.489
ADR21495.1
Polyprenyl synthetase; COGs: COG0142 Geranylgeranyl pyrophosphate synthase; InterPro IPR000092; KEGG: sli:Slin_5744 dimethylallyltranstransferase; PFAM: Polyprenyl synthetase; SPTR: Geranylgeranyl pyrophosphate synthetase (Ggpp synthetase) (Ggps); PFAM: Polyprenyl synthetase; Belongs to the FPP/GGPP synthase family.
 
  
 0.462
Your Current Organism:
Marivirga tractuosa
NCBI taxonomy Id: 643867
Other names: Flexibacter tractuosus DSM 4126, Flexibacter tractuosus IFO 15989, M. tractuosa DSM 4126, Marivirga tractuosa DSM 4126, Marivirga tractuosa IFO 15989, Marivirga tractuosa str. DSM 4126, Marivirga tractuosa strain DSM 4126
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