STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADR23240.1Tetratricopeptide TPR_1 repeat-containing protein; InterPro IPR001440: IPR019734: IPR013026; KEGG: gfo:GFO_3417 aerotolerance-related protein BatE; PFAM: Tetratricopeptide TPR_1 repeat-containing protein; SPTR: TPR repeat. (281 aa)    
Predicted Functional Partners:
ADR23239.1
Hypothetical protein; KEGG: gem:GM21_3712 tetratricopeptide TPR_2 repeat protein; SPTR: Tetratricopeptide TPR_2 repeat protein.
       0.784
ADR23238.1
Protein of unknown function DUF37; COGs: COG0759 conserved hypothetical protein; InterPro IPR002696; KEGG: oih:OB1687 hypothetical protein; PFAM: protein of unknown function DUF37; SPTR: UPF0161 protein TtheDRAFT_2097; PFAM: Domain of unknown function DUF37; TIGRFAM: conserved hypothetical protein YidD.
       0.781
ADR23237.1
KEGG: sli:Slin_5314 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.778
ADR23241.1
KEGG: dfe:Dfer_2950 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.675
ADR23236.1
Hypothetical protein; KEGG: ccs:CCNA_00201 outer membrane protein; SPTR: Putative uncharacterized protein.
       0.590
dnaK
Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
  
 0.492
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
   
 0.479
ADR22177.1
WD40 repeat, subgroup; COGs: COG2319 FOG: WD40 repeat; InterProIPR019782: IPR017986: IPR019781: IPR001680: IPR 019775; KEGG: chu:CHU_1024 hypothetical protein; PFAM: WD40 repeat, subgroup; SPTR: Peptidase C14, caspase catalytic subunit p20, putative; PFAM: WD domain, G-beta repeat.
  
 0.453
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.437
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.435
Your Current Organism:
Marivirga tractuosa
NCBI taxonomy Id: 643867
Other names: Flexibacter tractuosus DSM 4126, Flexibacter tractuosus IFO 15989, M. tractuosa DSM 4126, Marivirga tractuosa DSM 4126, Marivirga tractuosa IFO 15989, Marivirga tractuosa str. DSM 4126, Marivirga tractuosa strain DSM 4126
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