STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADR23359.1ATP binding protein; COGs: COG2102 ATPase of PP-loop superfamily; InterPro IPR002761; KEGG: gfo:GFO_1866 ATP-binding domain-containing protein; PFAM: protein of unknown function DUF71 ATP-binding region; SPTR: Putative uncharacterized protein; TIGRFAM: ATP binding protein; PFAM: ATP-binding region; TIGRFAM: MJ0570-related uncharacterized domain. (243 aa)    
Predicted Functional Partners:
ADR23360.1
KEGG: zpr:ZPR_0946 membrane protein; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF3667).
       0.773
ADR23361.1
KEGG: msv:Mesil_3075 hypothetical protein; SPTR: Putative uncharacterized protein.
 
     0.679
ADR23363.1
KEGG: fjo:Fjoh_0092 hypothetical protein; SPTR: Putative surface layer protein.
       0.627
ADR23364.1
TonB-dependent receptor; COGs: COG4206 Outer membrane cobalamin receptor protein; InterPro IPR012910: IPR000531; KEGG: gfo:GFO_1085 TonB-dependent outer membrane receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; SPTR: TonB-dependent receptor, putative; PFAM: TonB-dependent Receptor Plug Domain.
       0.627
ADR23362.1
Thioesterase superfamily protein; COGs: COG1607 Acyl-CoA hydrolase; InterPro IPR006683; KEGG: phe:Phep_2501 thioesterase superfamily protein; PFAM: thioesterase superfamily protein; SPTR: Long-chain acyl-CoA thioester hydrolase family protein; PFAM: Thioesterase superfamily.
       0.615
ADR22302.1
Small GTP-binding protein; COGs: COG0480 Translation elongation factors (GTPase); InterProIPR005225: IPR002127: IPR000795: IPR005517: IPR 000640; KEGG: pjd:Pjdr2_5938 small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor G domain IV; elongation factor G domain-containing protein; SPTR: Tetracycline resistance protein; TIGRFAM: small GTP-binding protein; PFAM: Elongation factor G C-terminus; Elongation factor Tu GTP binding domain; Elongation factor G, domain IV; TIGRFAM: translation elongation factor EF-G; small GTP-binding protein domain.
    
 0.572
fusA
Translation elongation factor 2 (EF-2/EF-G); Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. [...]
    
 0.572
Your Current Organism:
Marivirga tractuosa
NCBI taxonomy Id: 643867
Other names: Flexibacter tractuosus DSM 4126, Flexibacter tractuosus IFO 15989, M. tractuosa DSM 4126, Marivirga tractuosa DSM 4126, Marivirga tractuosa IFO 15989, Marivirga tractuosa str. DSM 4126, Marivirga tractuosa strain DSM 4126
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