STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADR23378.1Extracellular solute-binding protein family 3; InterPro IPR001638; KEGG: seq:SZO_06920 glutamine ABC transporter, glutamine-binding protein/permease protein; SMART: extracellular solute-binding protein family 3; SPTR: Putative uncharacterized protein; PFAM: Bacterial extracellular solute-binding proteins, family 3. (287 aa)    
Predicted Functional Partners:
ADR23379.1
Hypothetical protein; KEGG: pjd:Pjdr2_4740 restriction modification system DNA specificity domain protein; SPTR: Putative uncharacterized protein.
       0.762
ADR23377.1
Hypothetical protein; InterPro IPR019734: IPR013026; KEGG: tet:TTHERM_01156780 SLEI family protein; SPTR: Putative uncharacterized protein; PFAM: Tetratricopeptide repeat.
       0.605
ADR23376.1
Polynucleotide adenylyltransferase/metal dependent phosphohydrolase; COGs: COG0617 tRNA nucleotidyltransferase/poly(A) polymerase; InterPro IPR006675: IPR003607: IPR002646: IPR006674; KEGG: dfe:Dfer_2415 polynucleotide adenylyltransferase/metal dependent phosphohydrolase; PFAM: Polynucleotide adenylyltransferase region; metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; SPTR: TRNA nucleotidyltransferase; TIGRFAM: metal dependent phophohydrolase; PFAM: HD domain; Poly A polymerase head domain; TIGRFAM: uncharacterized domain HDIG; Belongs [...]
       0.475
Your Current Organism:
Marivirga tractuosa
NCBI taxonomy Id: 643867
Other names: Flexibacter tractuosus DSM 4126, Flexibacter tractuosus IFO 15989, M. tractuosa DSM 4126, Marivirga tractuosa DSM 4126, Marivirga tractuosa IFO 15989, Marivirga tractuosa str. DSM 4126, Marivirga tractuosa strain DSM 4126
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.