STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADR23409.1Transcriptional regulator, MarR family; COGs: COG1846 Transcriptional regulators; InterPro IPR000835; KEGG: dfe:Dfer_3933 transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; SPTR: Transcriptional regulator, MarR family protein; PFAM: MarR family. (144 aa)    
Predicted Functional Partners:
ADR23410.1
EppA_BapA family protein; InterPro IPR009894; KEGG: chu:CHU_1567 hypothetical protein; PFAM: EppA_BapA family protein; SPTR: Putative uncharacterized protein.
       0.513
ADR23411.1
KEGG: chu:CHU_1568 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.513
ADR23408.1
Abortive infection protein; InterPro IPR003675; KEGG: zpr:ZPR_4397 metal-dependent membrane protease; PFAM: Abortive infection protein; SPTR: Metal-dependent membrane protease; PFAM: CAAX amino terminal protease family.
       0.476
ADR23407.1
Polysaccharide deacetylase; InterPro IPR002509; KEGG: dfe:Dfer_4687 polysaccharide deacetylase; PFAM: polysaccharide deacetylase; SPTR: Polysaccharide deacetylase domain protein; PFAM: Polysaccharide deacetylase.
       0.453
ADR20176.1
COGs: COG1174 ABC-type proline/glycine betaine transport systems permease component; InterPro IPR000515: IPR007210; KEGG: cpi:Cpin_4963 binding-protein-dependent transport systems inner membrane component; PFAM: Substrate-binding region of ABC-type glycine betaine transport system; binding-protein-dependent transport systems inner membrane component; SPTR: Binding-protein-dependent transport systems inner membrane component; PFAM: Binding-protein-dependent transport system inner membrane component; Substrate binding domain of ABC-type glycine betaine transport system.
  
  
 0.407
Your Current Organism:
Marivirga tractuosa
NCBI taxonomy Id: 643867
Other names: Flexibacter tractuosus DSM 4126, Flexibacter tractuosus IFO 15989, M. tractuosa DSM 4126, Marivirga tractuosa DSM 4126, Marivirga tractuosa IFO 15989, Marivirga tractuosa str. DSM 4126, Marivirga tractuosa strain DSM 4126
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