STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADR23480.1Regulatory protein MerR; InterPro IPR000551; KEGG: dat:HRM2_19080 hypothetical protein; PFAM: regulatory protein MerR; SPTR: Putative uncharacterized protein; TIGRFAM: DNA binding domain, excisionase family. (120 aa)    
Predicted Functional Partners:
ADR23481.1
KEGG: pkn:PKH_112280 hypothetical protein; SPTR: Putative uncharacterized protein; manually curated.
       0.566
ADR23482.1
Integrase family protein; InterPro IPR002104; KEGG: bvu:BVU_2469 tyrosine type site-specific recombinase; PFAM: integrase family protein; SPTR: Integrase; PFAM: Phage integrase family; Belongs to the 'phage' integrase family.
       0.532
ADR23479.1
Hypothetical protein; COGs: COG3378 ATPase; KEGG: pdi:BDI_2140 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Virulence-associated protein E.
       0.531
Your Current Organism:
Marivirga tractuosa
NCBI taxonomy Id: 643867
Other names: Flexibacter tractuosus DSM 4126, Flexibacter tractuosus IFO 15989, M. tractuosa DSM 4126, Marivirga tractuosa DSM 4126, Marivirga tractuosa IFO 15989, Marivirga tractuosa str. DSM 4126, Marivirga tractuosa strain DSM 4126
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