STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADR23486.1Helix-turn-helix domain protein; InterPro IPR001387; KEGG: chu:CHU_1881 transcriptional regulator; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; SPTR: Transcriptional repressor LexA, putative; PFAM: Helix-turn-helix. (256 aa)    
Predicted Functional Partners:
ADR20252.1
HipA domain protein; COGs: COG3550 conserved hypothetical protein; InterPro IPR012894: IPR012893; KEGG: plt:Plut_1315 hypothetical protein; PFAM: HipA domain protein; SPTR: Putative uncharacterized protein; PFAM: HipA-like C-terminal domain; HipA-like N-terminal domain.
   
 
 0.712
ADR20375.1
COGs: COG0587 DNA polymerase III alpha subunit; InterPro IPR004805: IPR004013: IPR011708: IPR003141; KEGG: fjo:Fjoh_3769 DNA polymerase III, alpha subunit; PFAM: DNA polymerase III alpha subunit; PHP domain protein; PRIAM: DNA-directed DNA polymerase; SMART: phosphoesterase PHP domain protein; SPTR: DNA polymerase III, alpha subunit; TIGRFAM: DNA polymerase III, alpha subunit; PFAM: Bacterial DNA polymerase III alpha subunit; PHP domain; TIGRFAM: DNA-directed DNA polymerase III (polc).
  
     0.702
ADR23484.1
UMUC domain protein DNA-repair protein; InterPro IPR017963: IPR001126; KEGG: fjo:Fjoh_3568 DNA-directed DNA polymerase; PFAM: UMUC domain protein DNA-repair protein; SPTR: DNA-directed DNA polymerase; PFAM: impB/mucB/samB family.
  
     0.630
ADR20376.1
COGs: COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair; InterPro IPR001126: IPR017963; KEGG: fba:FIC_01143 DNA polymerase IV; PFAM: UMUC domain protein DNA-repair protein; PRIAM: DNA-directed DNA polymerase; SPTR: DNA-directed DNA polymerase; PFAM: impB/mucB/samB family C-terminal; impB/mucB/samB family.
  
     0.528
ADR23129.1
Putative membrane protein; InterPro IPR019861; KEGG: dfe:Dfer_3688 hypothetical protein; SPTR: Putative uncharacterized protein; TIGRFAM: putative membrane protein; PFAM: Protein of unknown function (DUF3308); TIGRFAM: Bacteroidetes-specific putative membrane protein.
  
     0.525
ADR23692.1
Hypothetical protein; InterPro IPR018130; KEGG: cpi:Cpin_6196 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.482
ADR20114.1
KEGG: cpi:Cpin_6196 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.459
ADR21827.1
KEGG: chu:CHU_0707 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.458
ADR20717.1
Putative membrane protein; InterPro IPR019861; KEGG: chu:CHU_1690 hypothetical protein; SPTR: Putative uncharacterized protein; TIGRFAM: putative membrane protein; PFAM: Protein of unknown function (DUF3308); TIGRFAM: Bacteroidetes-specific putative membrane protein.
  
     0.457
ADR23180.1
KEGG: chu:CHU_0918 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.455
Your Current Organism:
Marivirga tractuosa
NCBI taxonomy Id: 643867
Other names: Flexibacter tractuosus DSM 4126, Flexibacter tractuosus IFO 15989, M. tractuosa DSM 4126, Marivirga tractuosa DSM 4126, Marivirga tractuosa IFO 15989, Marivirga tractuosa str. DSM 4126, Marivirga tractuosa strain DSM 4126
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.