STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADR23576.1KEGG: chu:CHU_3178 hypothetical protein; SPTR: Membrane protein, putative; manually curated. (205 aa)    
Predicted Functional Partners:
ADR23575.1
COGs: COG1508 DNA-directed RNA polymerase specialized sigma subunit sigma54 homolog; InterPro IPR000394: IPR007046: IPR007634; KEGG: sli:Slin_0631 RNA polymerase, sigma 54 subunit, RpoN; PFAM: sigma-54 DNA-binding domain protein; sigma-54 factor core-binding region; sigma-54 factor; SPTR: RNA polymerase sigma-54 factor; TIGRFAM: RNA polymerase sigma-54 factor, RpoN; PFAM: Sigma-54 factor, Activator interacting domain (AID); Sigma-54, DNA binding domain; Sigma-54 factor, core binding domain; TIGRFAM: RNA polymerase sigma-54 factor.
       0.806
ADR23577.1
COGs: COG1024 Enoyl-CoA hydratase/carnithine racemase; InterPro IPR018376: IPR001753; KEGG: cpi:Cpin_0592 enoyl-CoA hydratase/isomerase; PFAM: Enoyl-CoA hydratase/isomerase; SPTR: Enoyl-CoA hydratase/isomerase; PFAM: Enoyl-CoA hydratase/isomerase family; Belongs to the enoyl-CoA hydratase/isomerase family.
       0.763
asnS
COGs: COG0017 Aspartyl/asparaginyl-tRNA synthetase; InterProIPR004522: IPR006195: IPR002312: IPR004365: IPR 004364; KEGG: cpi:Cpin_1004 asparaginyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; SPTR: Asparaginyl-tRNA synthetase; TIGRFAM: asparaginyl-tRNA synthetase; PFAM: tRNA synthetases class II (D, K and N); OB-fold nucleic acid binding domain; TIGRFAM: asparaginyl-tRNA synthetase.
       0.556
ADR21505.1
KEGG: chu:CHU_2674 hypothetical protein; SPTR: Fibronectin type III domain protein.
  
    0.551
ADR21162.1
Surface antigen variable number repeat-containing protein; COGs: COG4775 Outer membrane protein/protective antigen OMA87; InterPro IPR010827; KEGG: chu:CHU_2430 outer membrane protein; PFAM: surface antigen variable number repeat-containing protein; SPTR: Surface antigen variable number repeat domain protein; manually curated; PFAM: Surface antigen variable number repeat; Surface antigen.
  
     0.537
ADR23565.1
KEGG: dfe:Dfer_2989 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.537
ADR22536.1
Gliding motility-associated protein GldM; InterPro IPR019859; KEGG: aas:Aasi_0253 hypothetical protein; SPTR: Putative uncharacterized protein; TIGRFAM: gliding motility-associated protein GldM; PFAM: GldM C-terminal domain; GldM N-terminal domain; TIGRFAM: gliding motility-associated protein GldM.
  
     0.523
ADR21008.1
KEGG: sli:Slin_6385 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.493
ADR22951.1
KEGG: chu:CHU_2709 PorT-related protein; SPTR: PorT-related protein.
  
     0.485
ADR22171.1
Radical SAM domain protein; COGs: COG0535 Fe-S oxidoreductase; InterPro IPR007197; KEGG: dfe:Dfer_0205 radical SAM domain protein; PFAM: Radical SAM domain protein; SPTR: Radical SAM domain protein; PFAM: Radical SAM superfamily.
  
     0.482
Your Current Organism:
Marivirga tractuosa
NCBI taxonomy Id: 643867
Other names: Flexibacter tractuosus DSM 4126, Flexibacter tractuosus IFO 15989, M. tractuosa DSM 4126, Marivirga tractuosa DSM 4126, Marivirga tractuosa IFO 15989, Marivirga tractuosa str. DSM 4126, Marivirga tractuosa strain DSM 4126
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