STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ctaBProtoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group. (300 aa)    
Predicted Functional Partners:
ADR23661.1
Cytochrome oxidase assembly; COGs: COG1612 Uncharacterized protein required for cytochrome oxidase assembly; InterPro IPR003780; KEGG: phe:Phep_0296 cytochrome oxidase assembly; PFAM: cytochrome oxidase assembly; SPTR: Cytochrome oxidase assembly protein; PFAM: Cytochrome oxidase assembly protein.
 
 0.997
ADR23660.1
COGs: COG0843 Heme/copper-type cytochrome/quinol oxidase subunit 1; InterPro IPR000883; KEGG: chu:CHU_2206 cytochrome c oxidase, subunit I; PFAM: cytochrome c oxidase subunit I; SPTR: Cytochrome-c oxidase; PFAM: Cytochrome C and Quinol oxidase polypeptide I; Belongs to the heme-copper respiratory oxidase family.
 
 
 0.990
ADR23659.1
Cytochrome c oxidase subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
 
  
 0.984
ADR23663.1
COGs: COG1845 Heme/copper-type cytochrome/quinol oxidase subunit 3; InterPro IPR000298; KEGG: sli:Slin_5674 cytochrome c oxidase subunit III; PFAM: cytochrome c oxidase subunit III; SPTR: Probable cytochrome-c oxidase transmembrane protein; PFAM: Cytochrome c oxidase subunit III.
 
  
 0.983
ADR23664.1
COGs: COG1845 Heme/copper-type cytochrome/quinol oxidase subunit 3; InterPro IPR000298; KEGG: sli:Slin_5675 cytochrome c oxidase subunit III; PFAM: cytochrome c oxidase subunit III; SPTR: Cytochrome c oxidase subunit III; PFAM: Cytochrome c oxidase subunit III.
 
  
 0.977
hemH
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family.
   
 
 0.921
ADR22718.1
COGs: COG1845 Heme/copper-type cytochrome/quinol oxidase subunit 3; InterPro IPR000298; KEGG: lbf:LBF_2856 cytochrome c oxidase subunit III; PFAM: cytochrome c oxidase subunit III; SPTR: Putative additional subunit of nitric oxide reductase (Nor) complex, membrane protein; PFAM: Cytochrome c oxidase subunit III.
 
  
 0.916
ADR22128.1
InterPro IPR000298; KEGG: dfe:Dfer_4112 cytochrome c oxidase, subunit III; SPTR: Probable cytochrome-c oxidase transmembrane protein; PFAM: Cytochrome c oxidase subunit III.
 
  
 0.736
ADR23658.1
Quinol:cytochrome c oxidoreductase quinone-binding subunit 2; KEGG: chu:CHU_2208 hypothetical protein; SPTR: Putative uncharacterized protein.
  
  
 0.733
ADR23667.1
Protein of unknown function DUF420; COGs: COG2322 membrane protein; InterPro IPR007352; KEGG: sli:Slin_5678 protein of unknown function DUF420; PFAM: protein of unknown function DUF420; SPTR: YozB; PFAM: Protein of unknown function (DUF420).
 
    0.716
Your Current Organism:
Marivirga tractuosa
NCBI taxonomy Id: 643867
Other names: Flexibacter tractuosus DSM 4126, Flexibacter tractuosus IFO 15989, M. tractuosa DSM 4126, Marivirga tractuosa DSM 4126, Marivirga tractuosa IFO 15989, Marivirga tractuosa str. DSM 4126, Marivirga tractuosa strain DSM 4126
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