STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADR23678.1COGs: COG4864 conserved hypothetical protein; KEGG: chu:CHU_3230 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: SigmaW regulon antibacterial. (336 aa)    
Predicted Functional Partners:
ADR23679.1
Protein of unknown function DUF107; COGs: COG1030 Membrane-bound serine protease (ClpP class); InterPro IPR002810; KEGG: chu:CHU_3229 hypothetical protein; PFAM: protein of unknown function DUF107; SPTR: Putative uncharacterized protein; PFAM: NfeD-like.
 
    0.978
ADR23189.1
Protein of unknown function DUF107; COGs: COG1030 Membrane-bound serine protease (ClpP class); InterPro IPR002142: IPR002810; KEGG: chu:CHU_2844 serine protease, ClpP class; PFAM: protein of unknown function DUF107; peptidase S49; SPTR: Putative uncharacterized protein; PFAM: Peptidase family S49; NfeD-like.
 
    0.895
proS
prolyl-tRNA synthetase; Catalyzes the attachment of proline to tRNA(Pro) in a two- step reaction: proline is first activated by ATP to form Pro-AMP and then transferred to the acceptor end of tRNA(Pro).
  
    0.700
ADR23681.1
Hypothetical protein; KEGG: rbi:RB2501_10527 prolyl-tRNA synthetase; SPTR: Prolyl-tRNA synthetase.
       0.480
ADR23676.1
COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: chu:CHU_0063 A-glycosyltransferase; PFAM: glycosyl transferase group 1; SPTR: Glycosyl transferase, group 1 family protein; PFAM: Glycosyl transferases group 1.
       0.437
ADR23677.1
Phenazine biosynthesis protein PhzF family; COGs: COG0384 epimerase PhzC/PhzF homolog; InterPro IPR003719: IPR001412; KEGG: cbf:CLI_2226 PhzF family phenazine biosynthesis protein; PFAM: Phenazine biosynthesis PhzC/PhzF protein; SPTR: Phenazine biosynthesis protein PhzF family; TIGRFAM: phenazine biosynthesis protein PhzF family; PFAM: Phenazine biosynthesis-like protein; TIGRFAM: phenazine biosynthesis protein PhzF family.
       0.437
Your Current Organism:
Marivirga tractuosa
NCBI taxonomy Id: 643867
Other names: Flexibacter tractuosus DSM 4126, Flexibacter tractuosus IFO 15989, M. tractuosa DSM 4126, Marivirga tractuosa DSM 4126, Marivirga tractuosa IFO 15989, Marivirga tractuosa str. DSM 4126, Marivirga tractuosa strain DSM 4126
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