STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADR23762.1InterPro IPR018580; KEGG: bfs:BF4264 hypothetical protein; PFAM: Protein of unknown function, membrane YfhO; SPTR: Putative uncharacterized protein; PFAM: Bacterial membrane protein YfhO. (813 aa)    
Predicted Functional Partners:
ADR23761.1
COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: cpi:Cpin_4699 glycosyl transferase family 2; PFAM: glycosyl transferase family 2; SPTR: Succinoglycan biosynthesis protein; PFAM: Glycosyl transferase family 2.
  
  
 0.808
ADR23760.1
KEGG: chu:CHU_2757 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function DUF115.
       0.774
ADR22111.1
KEGG: chu:CHU_0307 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF2723).
  
     0.768
ADR20100.1
Hypothetical protein; COGs: COG1452 Organic solvent tolerance protein OstA; KEGG: chu:CHU_0749 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.722
ADR21995.1
KEGG: sli:Slin_1298 hypothetical protein; SPTR: Putative outer membrane protein.
 
     0.691
ADR20133.1
KEGG: dfe:Dfer_2899 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF3109).
  
     0.689
ADR23759.1
KEGG: rde:RD1_4206 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Polysaccharide pyruvyl transferase.
       0.671
rpoZ
DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
 
     0.627
ADR21761.1
Outer membrane chaperone Skp (OmpH); InterPro IPR005632; KEGG: chu:CHU_3413 OmpH family outer membrane protein; PFAM: outer membrane chaperone Skp (OmpH); SPTR: Outer membrane protein, ompH family; PFAM: Outer membrane protein (OmpH-like).
  
     0.621
ADR22158.1
Metallophosphoesterase; COGs: COG2908 conserved hypothetical protein; InterPro IPR004843; KEGG: dfe:Dfer_2991 UDP-2,3-diacylglucosamine hydrolase; PFAM: metallophosphoesterase; SPTR: Putative UDP-2,3-diacylglucosamine hydrolase; PFAM: Calcineurin-like phosphoesterase.
 
     0.610
Your Current Organism:
Marivirga tractuosa
NCBI taxonomy Id: 643867
Other names: Flexibacter tractuosus DSM 4126, Flexibacter tractuosus IFO 15989, M. tractuosa DSM 4126, Marivirga tractuosa DSM 4126, Marivirga tractuosa IFO 15989, Marivirga tractuosa str. DSM 4126, Marivirga tractuosa strain DSM 4126
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