STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADR21396.1Integrase family protein; COGs: COG4974 Site-specific recombinase XerD; InterPro IPR002104; KEGG: gfo:GFO_0671 phage integrase family protein; PFAM: integrase family protein; SPTR: Phage integrase family protein; tmRNA as predicted by Rfam (RF00023), score 131.11; PFAM: Phage integrase family; Belongs to the 'phage' integrase family. (403 aa)    
Predicted Functional Partners:
ADR20440.1
KEGG: zpr:ZPR_2233 putative DNA-binding protein; SPTR: Putative DNA-binding protein.
 
   
 0.773
ADR21202.1
KEGG: zpr:ZPR_2233 putative DNA-binding protein; SPTR: Putative DNA-binding protein.
 
   
 0.773
ADR20439.1
KEGG: fps:FP1538 hypothetical protein; SPTR: Putative uncharacterized protein.
 
   
 0.732
ADR20438.1
KEGG: chu:CHU_1184 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: AAA domain (dynein-related subfamily).
  
     0.649
ADR21203.1
KEGG: chu:CHU_1184 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: AFG1-like ATPase.
  
     0.649
ADR23478.1
KEGG: zpr:ZPR_3424 DNA primase; SPTR: Mobilizable transposon, excision protein.
 
  
 0.614
ADR20143.1
TonB-dependent receptor; InterPro IPR012910: IPR000531: IPR001412; KEGG: zpr:ZPR_2449 TonB-dependent outer membrane receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; SPTR: TonB-dependent outer membrane receptor; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor.
  
     0.554
ADR20144.1
RagB/SusD domain protein; InterPro IPR012944; KEGG: zpr:ZPR_2448 SusD/RagB family protein; PFAM: RagB/SusD domain protein; SPTR: SusD/RagB family protein; PFAM: SusD family.
  
     0.518
ADR23479.1
Hypothetical protein; COGs: COG3378 ATPase; KEGG: pdi:BDI_2140 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Virulence-associated protein E.
 
     0.483
ADR23153.1
KEGG: fps:FP1547 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.462
Your Current Organism:
Marivirga tractuosa
NCBI taxonomy Id: 643867
Other names: Flexibacter tractuosus DSM 4126, Flexibacter tractuosus IFO 15989, M. tractuosa DSM 4126, Marivirga tractuosa DSM 4126, Marivirga tractuosa IFO 15989, Marivirga tractuosa str. DSM 4126, Marivirga tractuosa strain DSM 4126
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